Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37470 384 / 9e-136 alpha/beta-Hydrolases superfamily protein (.1) AT3G03990 293 / 4e-100 alpha/beta-Hydrolases superfamily protein (.1) AT3G24420 208 / 2e-66 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 44 / 7e-05 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014859 [exp] 443 / 6e-159 AT4G37470 442 / 5e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10019303 [exp] 407 / 7e-145 AT4G37470 433 / 4e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10010398 [exp] 357 / 3e-125 AT4G37470 335 / 1e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10018686 [exp] 285 / 9e-97 AT3G03990 448 / 4e-161 alpha/beta-Hydrolases superfamily protein (.1) Lus10015633 [exp] 239 / 3e-80 AT4G37470 188 / 1e-60 alpha/beta-Hydrolases superfamily protein (.1) Lus10000054 [exp] 212 / 5e-70 AT4G37470 192 / 7e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10017296 [exp] 203 / 2e-64 AT3G03990 232 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Lus10013541 [exp] 202 / 3e-64 AT3G03990 234 / 7e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10033087 [exp] 194 / 8e-61 AT3G24420 281 / 3e-95 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G145000 [exp] 402 / 4e-143 AT4G37470 468 / 7e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G052000 [exp] 399 / 9e-142 AT4G37470 451 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G118900 [exp] 296 / 4e-101 AT3G03990 440 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G016500 [exp] 296 / 4e-101 AT3G03990 434 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G062700 [exp] 225 / 5e-73 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G155500 [exp] 204 / 8e-65 AT3G24420 331 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 44 / 8e-05 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 41 / 0.0005 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G048000 [exp] 41 / 0.0007 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10037651 pacid=23167214 polypeptide=Lus10037651 locus=Lus10037651.g ID=Lus10037651.BGIv1.0 annot-version=v1.0 ATGGCATCACTACGAGAAGCTCACAACATCAAGGTGGTGGGCTCCGGCGACCAGGTCGTCGTCTTAGCTCACGGCTTCGGCACCGACCAGTCCGTCTGGA AGCACCTCCTCCCTCACTTGCTCGCCGACGACGAAGATTTCACGGTCGTCCTTTATGACAACATGGGCGCCGGCACCACCAACCCTGATTTCTTCAACTT TGAACGCTACTCCGGCCTCGAAGCCTACGCCGCCGATCTCCTCACCATTCTCGACGACCTCCATGTCGAGTCGTGCATCTACGTCGGCCACTCTGTTTCC GCCATGATCGGCGTTGTCGCCTCCATCAGCCGCCCTCAACTCTTCCTCAAACTCATCCTCCTCGCCGGCTCCCCTAGGTATTTGAACGATTCGGATTACT TCGGGGGATTCGAGCAGGAAGACCTGGACCAGCTTTTCCGAGGGATGCAGTCGAATTACAAGGCGTGGTGCGGCGGGTACGCGCCGTTGATCGTCGGCGG GGACATGGATTCGGTGGCAGTGCAGGAATTTTGCAGGACGCTGTTCAATATGCGGCCGGACATAGCTCTACGGATCGCGCAGGTTGGGCTCCAGAGCGAT ATGAGGAGCATTCTTCACATGGTCACCGTCCCCTGCCACATCGTGCAGAGCGCCAAGGACTCGGCGGTTCCGGTGGCGGTGTCAGAGTATCTCCACTCTC ATCTGGGAGGGGAGTCCATCGTCGAGGTCATGCCGACTGAGGGCCACCTTCCGCAGCTCAGCTCGCCGGACGTTGTGGTCCCGGTGCTGCTCCGACATAT TCGTTGCAATATCGCTCACCAATGA
AA sequence Show only first row Show all	>Lus10037651 pacid=23167214 polypeptide=Lus10037651 locus=Lus10037651.g ID=Lus10037651.BGIv1.0 annot-version=v1.0 MASLREAHNIKVVGSGDQVVVLAHGFGTDQSVWKHLLPHLLADDEDFTVVLYDNMGAGTTNPDFFNFERYSGLEAYAADLLTILDDLHVESCIYVGHSVS AMIGVVASISRPQLFLKLILLAGSPRYLNDSDYFGGFEQEDLDQLFRGMQSNYKAWCGGYAPLIVGGDMDSVAVQEFCRTLFNMRPDIALRIAQVGLQSD MRSILHMVTVPCHIVQSAKDSAVPVAVSEYLHSHLGGESIVEVMPTEGHLPQLSSPDVVVPVLLRHIRCNIAHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10037651 [exp]	0	1
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012693 [exp]	4.0	0.8603
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Lus10013081 [exp]	7.9	0.7870
					Lus10030151 [exp]	9.5	0.8243
					Lus10017380 [exp]	9.8	0.7471
AT4G21970			Protein of unknown function, D...		Lus10040067 [exp]	14.5	0.7769
AT1G53440			Leucine-rich repeat transmembr...		Lus10038153 [exp]	14.8	0.8106
AT2G37880			Protein of unknown function, D...		Lus10022595 [exp]	24.3	0.7221
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	25.3	0.6889
					Lus10025402 [exp]	27.8	0.7912
AT5G52390			PAR1 protein (.1)		Lus10016450 [exp]	27.9	0.8014

Compare expression of checked genes

Lus10037651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.