Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17710 255 / 2e-85 AtPEPC1 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) AT1G73010 247 / 3e-82 AtPPsPase1, ATPS2 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) AT4G29530 187 / 2e-59 Pyridoxal phosphate phosphatase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015634 [exp] 379 / 7e-135 AT1G17710 301 / 2e-103 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10001479 [exp] 275 / 3e-93 AT1G17710 381 / 1e-134 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10008479 [exp] 273 / 1e-92 AT1G17710 378 / 3e-133 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015632 [exp] 267 / 4e-90 AT1G17710 372 / 1e-130 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10037650 [exp] 261 / 8e-88 AT1G17710 359 / 1e-125 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10008573 [exp] 177 / 1e-55 AT4G29530 285 / 5e-98 Pyridoxal phosphate phosphatase-related protein (.1) Lus10032691 [exp] 53 / 7e-08 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G196800 [exp] 278 / 2e-94 AT1G73010 397 / 2e-140 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) Potri.003G034600 [exp] 261 / 1e-87 AT1G17710 399 / 1e-141 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Potri.018G054800 [exp] 209 / 1e-67 AT1G17710 311 / 7e-107 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF06888 [flax] [poplar] Put_Phosphatase Putative Phosphatase
Representative CDS sequence Show only first row Show all	>Lus10037652 pacid=23167311 polypeptide=Lus10037652 locus=Lus10037652.g ID=Lus10037652.BGIv1.0 annot-version=v1.0 ATGTCTTCGGGAGGGGTAGTAGTACTCTACGACTTCGACGAAACAATCGTCGGAGTCGACACCGATTACTGGTTGATCGACGAGTTCGGTTACACCCACT TGGCCGACCAACTCCGCCCCACTATGCCGTGGAACTCCATCATTAGATACAAGAACATGAGGGAACCATTGATGACATTGTTTGAGCTTTGGAAAGAATT CCAATCCTCCCTAGGGTGCGAGCTGAGGATCGTAAGCGACTCGAACGTGTTCTTCATCGAAAAAGTGTTGGAGAACCTTGGAGTGAGGAGATATTTCTCA GAAATCAACACAAACTCAGGGTTTGTTGACGATCAAGGAAGGTTGAGGGTTGCTCCTTACCATGATTTCACCAAGGCTTCACATGGTTGTACCCTTTGCC CGCCAAACATGTGCAAGGGGTTGATAGTGGAGAGAATCCAAGCATCCATAGCAAAAGAAGAAGCAAAAAGCAACAGCAAAAGGATCATCTACGTGGGAGA TGGAATTGGGGATTACTGTCCAAGCATGAAGCTCAAGGAATCTGATTTCCTGTTGCCCAGGAAGAACTTCAAACTGTGGGATTTGATCAACAAGAATAAG AACCCACTTGAAATAATCAAGGCTCAGATCCATGAATGGAGTGATGGAGATGAGCTCGACATTGCTGACATCGTTCAGAAAATTAATTGA
AA sequence Show only first row Show all	>Lus10037652 pacid=23167311 polypeptide=Lus10037652 locus=Lus10037652.g ID=Lus10037652.BGIv1.0 annot-version=v1.0 MSSGGVVVLYDFDETIVGVDTDYWLIDEFGYTHLADQLRPTMPWNSIIRYKNMREPLMTLFELWKEFQSSLGCELRIVSDSNVFFIEKVLENLGVRRYFS EINTNSGFVDDQGRLRVAPYHDFTKASHGCTLCPPNMCKGLIVERIQASIAKEEAKSNSKRIIYVGDGIGDYCPSMKLKESDFLLPRKNFKLWDLINKNK NPLEIIKAQIHEWSDGDELDIADIVQKIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10037652 [exp]	0	1
AT4G34810			SAUR-like auxin-responsive pro...		Lus10007561 [exp]	12.8	0.9593
AT1G72490			unknown protein		Lus10037689 [exp]	19.4	0.9443
AT4G34810			SAUR-like auxin-responsive pro...		Lus10012184 [exp]	24.1	0.9439
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10030843 [exp]	29.1	0.9412
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	30.9	0.9319
					Lus10042799 [exp]	31.5	0.9410
					Lus10037775 [exp]	33.2	0.9058
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10032355 [exp]	35.7	0.9403
AT4G16230			GDSL-like Lipase/Acylhydrolase...		Lus10016916 [exp]	37.7	0.9403
AT2G04220			Plant protein of unknown funct...		Lus10043317 [exp]	41.6	0.9391

Compare expression of checked genes

Lus10037652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.