Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17720 820 / 0 ATBBETA, ATB BETA Protein phosphatase 2A, regulatory subunit PR55 (.1.2) AT1G51690 787 / 0 ATB ALPHA, ATBALPHA protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015635 [exp] 965 / 0 AT1G17720 878 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10012083 [exp] 683 / 0 AT1G17720 669 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10001239 [exp] 535 / 0 AT1G17720 576 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10042101 [exp] 525 / 0 AT1G17720 570 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10007401 [exp] 489 / 4e-170 AT1G51690 460 / 7e-159 protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197300 [exp] 851 / 0 AT1G17720 861 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.003G034300 [exp] 838 / 0 AT1G17720 840 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.006G231000 [exp] 829 / 0 AT1G17720 831 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.018G055001 [exp] 828 / 0 AT1G17720 823 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.015G079300 [exp] 562 / 0 AT1G17720 547 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10037653 pacid=23167363 polypeptide=Lus10037653 locus=Lus10037653.g ID=Lus10037653.BGIv1.0 annot-version=v1.0 ATGAACGGTGGCGATGAGGTCACGGCAGCAGCTCCGGCGAGCCCACCTCTTGAGTGGAAATTCTCTCAGGTCTTCGGCGAGCCAACTGCCGGAGAGGAAT TGCAGGAAGTAGACATAATTTCAGCTATTGAGTTTGATAAAACCGGGGATCATCTTGCTACCGGGGATCGCGGAGGACGTGTGGTTCTTTTTGAGAGGAC AGATACCAAGGATCATGGTGGATCAAGGAGAGATCTGGAAAGGATGGATTTCCCTATTAGCAGGCATCCTGAGTTCCGTTACAAAACAGAATTTCAGAGC CACGAACCTGAGTTTGACTATCTCAAGAGTTTGGAAATAGAGGAGAAAATCAACAAAATCAGATGGTGCCAAGCAGCTAATGGTGCTCTTTTTCTTCTAT CTACAAATGATAAGACAATTAAGTTTTGGAAGGTCCAAGAAAAGAAGGTGAAGAAGATTTCTGAGATGAATGTGGAACCTTCAAAATCTTTAGGAAATGA CAGTGTTGCTAGTTCAAGTAATTCAAGTACTTCTAAGCCATATCTACCAAATGGTGGTTCCACAGAGAGGCTGCAGAACACTCTGAGCAATGATTTCAAC ATCCCAGCCGGAGGATTCCCCTCACTGCGTCTGCCAGTGGTTACAAGTGCTGAGACGAGTCTGGTGGCAAGATGTCGTAGGGTCTATGCACATGCTCATG ATTATCACATTAATTCCATTTCAAGCAATAGTGATGGAGAGACCTTTATATCAGCTGATGATCTGCGAATAAATCTTTGGAACTTGGAAATTAGCAACCA AAGTTTCAATATTGTCGATGTCAAACCTGCAAATATGGAGGATCTAACTGAGGTAATAACTTCAGCCGAGTTCCATCCCAATCAATGTAACATGTTAGCT TATAGCAGCTCAAAGGGCTCAATCAGACTAATTGATTTACGACAATCAGCTCTCTGTGATTCTCATGCTAAACTGTTCGAAGAACAGGAGGCTCCTGGCT CTAGGTCATTCTTCACAGAGATAATTGCTTCAATCTCTGATATTAAATTTGCAAAAGACGGGCGATATCTACTTAGTCGTGATTACATGACACTAAAGTT GTGGGATATCAATATGGATTCTGGCCCAGTTTCAACCTTCCAGGTTCACGAACATTTAAGACCCAAGCTCTGTGATCTATATGAAAACGATTCCATCTTC GACAAATTCGAGTGTTGTTTAAGTGGAGATGGCTCCCGTGTAGCTACAGGATCATATAGCAATCTATTCCGTGTGTTCGGTTGCTCCACTGGAAGCAGCG AGGCAACAACTTTGGAAGCCAGTAAAAATCCTATGAGGAGACAAGTTCAGACTCCTTCAAGGCCCTCAAGATCCCTCACAACTTTAACCCGTGTAGTACG ACGCGGATCCGATAACCAAGGAGTCGATGCAAACGGGAACTCGTTCGACTCTGCAACAAAGTTGCTGCACCTTGCATGGCACCCTACTGAAAACTCGATC GCCTGTGCCGCCGCAAACAGCTTGTACATGTATTATGCATAA
AA sequence Show only first row Show all	>Lus10037653 pacid=23167363 polypeptide=Lus10037653 locus=Lus10037653.g ID=Lus10037653.BGIv1.0 annot-version=v1.0 MNGGDEVTAAAPASPPLEWKFSQVFGEPTAGEELQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDFPISRHPEFRYKTEFQS HEPEFDYLKSLEIEEKINKIRWCQAANGALFLLSTNDKTIKFWKVQEKKVKKISEMNVEPSKSLGNDSVASSSNSSTSKPYLPNGGSTERLQNTLSNDFN IPAGGFPSLRLPVVTSAETSLVARCRRVYAHAHDYHINSISSNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPNQCNMLA YSSSKGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRYLLSRDYMTLKLWDINMDSGPVSTFQVHEHLRPKLCDLYENDSIF DKFECCLSGDGSRVATGSYSNLFRVFGCSTGSSEATTLEASKNPMRRQVQTPSRPSRSLTTLTRVVRRGSDNQGVDANGNSFDSATKLLHLAWHPTENSI ACAAANSLYMYYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10037653 [exp]	0	1
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10028534 [exp]	1.7	0.9059
AT3G58580			DNAse I-like superfamily prote...		Lus10015981 [exp]	3.9	0.8545
AT3G03340		UNE6	unfertilized embryo sac 6, LUC...		Lus10020225 [exp]	7.6	0.8758
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	12.6	0.8461
AT4G24840			unknown protein		Lus10009908 [exp]	16.1	0.8523
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	17.2	0.8519
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	18.7	0.8281
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	20.8	0.8623
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038008 [exp]	24.2	0.8595
AT3G58640			Mitogen activated protein kina...		Lus10017649 [exp]	24.4	0.8384

Compare expression of checked genes

Lus10037653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.