Plant FIBer expression Database

Lus10037654 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G46310 42 / 2e-05 unknown protein
AT5G02640 41 / 6e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015636
[exp]
204 / 6e-69 ND /
Lus10023327
[exp]
111 / 6e-32 AT5G02640 79 / 3e-19 unknown protein
Lus10038485
[exp]
109 / 2e-31 AT5G02640 73 / 9e-17 unknown protein
Lus10025282
[exp]
51 / 2e-08 AT5G02640 130 / 4e-39 unknown protein
Lus10009066
[exp]
45 / 3e-06 AT5G02640 107 / 8e-30 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G081600
[exp]
62 / 4e-13 AT5G02640 144 / 1e-44 unknown protein
Potri.006G215000
[exp]
61 / 2e-12 AT5G02640 144 / 1e-44 unknown protein
PFAM info
Representative CDS sequence
>Lus10037654 pacid=23167348 polypeptide=Lus10037654 locus=Lus10037654.g ID=Lus10037654.BGIv1.0 annot-version=v1.0
ATGGCATCATCCTGCATATCCAGCTGCATGAACGACGTGGTCGCAGCAGCACACCTGCCGCTCCGTAGGTTTCCTGCGACGGCTACACTCATCGACCAGA
GGGAGCCTCTGGTCGGAGAGTCTGGCCGAAAGTTTACCAGCTTCGAGGAGCGTTGCTACAGGCAGTTGTACCTTAGGAGCTACACCTTCCGTAGGAAGGA
GACGTTTCGTGGGAAGGCGAAGCGGCGTATTCGCAATGTCCTCGAAGGAGTAAAGAGGAGGAGATTAACCAACAAGGCGGCGGTAAAAAGGAAGAAGAAG
ATGATGTGTTTGAGGAAGGCAAGGAAGTTGACGTATGCAGTTCTGCTTAGGATTTTGAGGAGATTGATGATGAATTGTACCACAAGGGTCGATACAACGT
CAGATTGA
AA sequence
>Lus10037654 pacid=23167348 polypeptide=Lus10037654 locus=Lus10037654.g ID=Lus10037654.BGIv1.0 annot-version=v1.0
MASSCISSCMNDVVAAAHLPLRRFPATATLIDQREPLVGESGRKFTSFEERCYRQLYLRSYTFRRKETFRGKAKRRIRNVLEGVKRRRLTNKAAVKRKKK
MMCLRKARKLTYAVLLRILRRLMMNCTTRVDTTSD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10037654
[exp]
0 1
AT2G36760 UGT73C2 UDP-glucosyl transferase 73C2 ... Lus10014404
[exp]
3.3 0.7310
AT5G04220 SYT3, NTMCTYPE1... synaptotagmin 3, Calcium-depen... Lus10037993
[exp]
13.1 0.7970
AT1G10370 GST30B, ATGSTU1... GLUTATHIONE S-TRANSFERASE U17,... Lus10013282
[exp]
28.0 0.7761
AT2G24520 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase... Lus10026944
[exp]
52.8 0.7053
AT3G06880 Transducin/WD40 repeat-like su... Lus10034937
[exp]
73.8 0.7044
Lus10019466
[exp]
95.3 0.6567
AT5G54740 SESA5 seed storage albumin 5 (.1) Lus10040411
[exp]
96.7 0.6639
AT3G45140 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGE... Lus10031238
[exp]
102.6 0.6715
AT1G74460 GDSL-like Lipase/Acylhydrolase... Lus10001643
[exp]
109.8 0.6951
AT2G23600 ATMES2, ACL, AT... ARABIDOPSIS THALIANA METHYL ES... Lus10038593
[exp]
143.5 0.6564

Lus10037654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.