Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20510 270 / 1e-90 Alfin AL5 alfin-like 5 (.1) AT3G42790 254 / 2e-84 Alfin AL3 alfin-like 3 (.1) AT2G02470 254 / 3e-84 Alfin AL6 alfin-like 6 (.1.2) AT1G14510 252 / 1e-83 Alfin AL7 alfin-like 7 (.1) AT5G26210 238 / 8e-78 Alfin AL4 alfin-like 4 (.1) AT5G05610 209 / 8e-67 Alfin AL1 alfin-like 1 (.1.2) AT3G11200 200 / 4e-63 Alfin AL2 alfin-like 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015637 [exp] 326 / 2e-112 AT5G20510 353 / 4e-124 alfin-like 5 (.1) Lus10026269 [exp] 256 / 8e-85 AT2G02470 380 / 7e-135 alfin-like 6 (.1.2) Lus10026268 [exp] 255 / 1e-84 AT2G02470 382 / 2e-135 alfin-like 6 (.1.2) Lus10042402 [exp] 218 / 3e-70 AT2G02470 357 / 4e-126 alfin-like 6 (.1.2) Lus10028280 [exp] 215 / 4e-69 AT5G05610 333 / 7e-117 alfin-like 1 (.1.2) Lus10014843 [exp] 214 / 1e-68 AT5G05610 363 / 2e-128 alfin-like 1 (.1.2) Lus10009889 [exp] 214 / 1e-68 AT5G05610 358 / 2e-126 alfin-like 1 (.1.2) Lus10005035 [exp] 213 / 2e-68 AT5G05610 325 / 2e-113 alfin-like 1 (.1.2) Lus10040207 [exp] 208 / 1e-66 AT5G05610 309 / 2e-107 alfin-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G050200 [exp] 295 / 4e-100 AT5G20510 343 / 4e-120 alfin-like 5 (.1) Potri.006G223500 [exp] 294 / 8e-100 AT5G20510 327 / 5e-114 alfin-like 5 (.1) Potri.006G145300 [exp] 285 / 2e-96 AT5G20510 311 / 1e-107 alfin-like 5 (.1) Potri.003G044700 [exp] 261 / 8e-87 AT2G02470 363 / 3e-128 alfin-like 6 (.1.2) Potri.004G230500 [exp] 259 / 2e-86 AT2G02470 361 / 3e-127 alfin-like 6 (.1.2) Potri.006G100900 [exp] 213 / 4e-68 AT5G05610 311 / 6e-108 alfin-like 1 (.1.2) Potri.010G188100 [exp] 211 / 2e-67 AT5G05610 333 / 6e-117 alfin-like 1 (.1.2) Potri.008G069200 [exp] 210 / 4e-67 AT5G05610 336 / 5e-118 alfin-like 1 (.1.2) Potri.016G116900 [exp] 209 / 6e-67 AT5G05610 305 / 1e-105 alfin-like 1 (.1.2) Potri.009G121000 [exp] 42 / 0.0003 AT4G39100 318 / 2e-111 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF12165 [flax] [poplar] Alfin Alfin
Representative CDS sequence Show only first row Show all	>Lus10037655 pacid=23167254 polypeptide=Lus10037655 locus=Lus10037655.g ID=Lus10037655.BGIv1.0 annot-version=v1.0 ATGGAGGCCGGAGTCGGAGCGAACTACAATCCCCGTACGGTGGAGGAAGTCTTTAGGGATTTCAAAGGCCGCCGAGCTGGTCTGATTAAGGCGCTCACTA CTGATGTTGAAGACTTCTACCAGCAGTGTGATCCTGATTGCTGGATTGGAATAGATAAATCTAGTATCTTGGTGGATTGGTATTCTATGTTTCTTCTTGA GTTTCTAGCTATCGTTTCTCAGAATGTAATTTCACCTCTAATGTTTCCTGGATTGCTCCGGGCGATCTGTCTTTTCTTTGCAGAGAAGGAGAACCTGTGC TTGTATGGATTTCCAAGCGAGCAGTGGGAAGTCAACTTGCCAGCTGAAGAAGTGCCTCCAGAGCTTCCCGAGCCTGCGTTGGGTATAAACTTTGCAAGGG ATGGCATGCAAGAGAAGGACTGGCTGTCCTTAGTTGCTGTGCATAGTGATGCATGGTTGCTTTCTGTTGCTTTCTACTTTGGAGCCAGATTTGGATTTGA TAAATCTGACAGGAAGAGGCTGTTCAATATGATGAATGAGCTGCCATCAAGGCAGTCAACTCTGAGTCATGATGCTCTGATTCAGAAGCAACGAACTAGA AAATGGTGGACGACTGTGATTCGGTATCTCATATATGTGCTGTGTTGTCATTTCAAGCAGCCGGTGAAGTATACAAAGATGGCTCAGCAAGAAGATGAAG TGGTGGACGATGAGGAAGAAGGAGACGAGGAAGATGAAGATGAAGATGACGAGCATGGAGATACACTGTGCGGAGCGTGTGGTGAGAATTACGGAGCTGA CGAGTTCTGGATCTGCTGCGACGTCTGCGAGAAGTGGTTCCATGGTAAGTGCGTTAAGATCACGCCGGCTAGAGCCGAGCATATCAAGCAGTACAAATGC CCTTCGTGCAGCAGCAACAAAAGATCCCGCCCATGA
AA sequence Show only first row Show all	>Lus10037655 pacid=23167254 polypeptide=Lus10037655 locus=Lus10037655.g ID=Lus10037655.BGIv1.0 annot-version=v1.0 MEAGVGANYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYQQCDPDCWIGIDKSSILVDWYSMFLLEFLAIVSQNVISPLMFPGLLRAICLFFAEKENLC LYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMMNELPSRQSTLSHDALIQKQRTR KWWTTVIRYLIYVLCCHFKQPVKYTKMAQQEDEVVDDEEEGDEEDEDEDDEHGDTLCGACGENYGADEFWICCDVCEKWFHGKCVKITPARAEHIKQYKC PSCSSNKRSRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	0	1
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10015637 [exp]	1.0	0.9590
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10031078 [exp]	1.4	0.9194
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10037606 [exp]	2.2	0.9043
AT1G50660			unknown protein		Lus10043111 [exp]	2.4	0.9158
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10007365 [exp]	3.2	0.8793
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10004455 [exp]	3.7	0.8978
AT3G48710			DEK domain-containing chromati...		Lus10025759 [exp]	4.0	0.9056
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	4.7	0.8758
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10002168 [exp]	4.9	0.9030
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Lus10009963 [exp]	4.9	0.8863

Compare expression of checked genes

Lus10037655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.