Plant FIBer expression Database

Lus10037656 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14010 268 / 5e-81 CID4 CTC-interacting domain 4 (.1.2.3.4)
AT1G54170 261 / 2e-78 CID3 CTC-interacting domain 3 (.1)
AT5G54920 62 / 8e-10 unknown protein
AT4G26990 59 / 6e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015638
[exp]
645 / 0 AT3G14010 294 / 2e-92 CTC-interacting domain 4 (.1.2.3.4)
Lus10040755
[exp]
66 / 8e-11 AT5G54920 269 / 6e-84 unknown protein
Lus10016477
[exp]
61 / 2e-09 AT5G54920 271 / 5e-85 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G171100
[exp]
492 / 2e-166 AT3G14010 298 / 9e-93 CTC-interacting domain 4 (.1.2.3.4)
Potri.003G063000
[exp]
461 / 3e-154 AT3G14010 322 / 9e-102 CTC-interacting domain 4 (.1.2.3.4)
Potri.001G423200
[exp]
75 / 9e-14 AT5G54920 253 / 3e-77 unknown protein
Potri.011G138600
[exp]
73 / 4e-13 AT5G54920 148 / 1e-38 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06741 LsmAD LsmAD domain
Representative CDS sequence
>Lus10037656 pacid=23167157 polypeptide=Lus10037656 locus=Lus10037656.g ID=Lus10037656.BGIv1.0 annot-version=v1.0
ATGCTGCTCGAGGCCGTGAATCGGGCAGCTCGTGTCGATCATTCAGATGTTGTCTTCAAAGTTGACTCGTCTGAGGTGGTGACATCGATAGCAAGCAATA
CACGAGACTCTACGATGTTCGCTTCCCCCTTCGATCACACCGAGTCATCGTCGGCTTTAGGTTCCCGTTTCTCCGATCTCTCTACTCCATCTTTCTTCCG
TCGCTGGAGCTCCGATCTGCTCGCCTCTGTATCCTCCGAAAGAAACCTTCATATTCCCCCGTTGGCCCATTCCGCTCTTCTTCCCAATCCCTCTAAGCTT
AACCCTAATTTCTCCATAGCCAATTCCTCTCCGTGGTTGACCGGTTTCCGAATCTTTGTCGGCTCTTCTGAAGGGTTTCGTTTTTTATTTCCCGAGGTTC
TGTTGCTTAGGATTGGTGCTGCAGAGATGAGTATTCAACAGTCTGTGCAGCCCAAGTCTTCTACCAATGGTTTTAATCGTCGAAGGACTGACAGGGAAGG
AGGAATAAGATTGGACAATAAACCTCAGTCAGGAAAATTTAGTCAGGATAGATCAATCAATGCAACAGGGACAGGCAGAACTCAAGTTTATGAGAGTCCT
TCTCGTGACAGGCTGGTCTACCTGTCAACCTGCCTTATTGGGCTGCCTGTGGAAGTCCAGCTAAAAGATGGATCCATGTACTGTGGAACATGCTACACCA
CAAATGTTGAGAAGGATTTTGCCATTGTTTTGAAAATGGCTCGCTTGACGAAGGATGTGTCTCATCGAGGGAGTAAGGCAGCATATGTTAGCAAAGCTCC
TTCAAAGACTTTAATTATACCTGGAAAAGATGTTGCGGAAGTTATAGCTAAGGATGTCCCTGTAACTGTTGATGGGCTCTCCAATGAGCTTCAAAGTGAA
AGACATCAGGATATTTTGATTGATGCGACCATATCGAGGTCCCATCATGTCGATGCAGAAAGAGAGCTGGAACCTTGGGTACCTGATGGAGATGATCTGC
AATGCCCTGAACTAGAGAACATATTTGACGGCTCTTGGAATAGAGGATGGGATCAATTTGAAACAAACAAAATGTTGTTTGGAGTGAAAAGCACTTTTGA
TGAGGAGCTATATACGACGAAGTTGGAGAAGGGCCCTCGAATGAGAGAGTTGGAGAGGGAAGCTATGAGGATAGCAAGAGAAATCGAGGGCGAGGAGACA
AAAGATCTACATTTAGCAGAGGCAAGAGGTGACCATTTCGATATTGATGAGGAGACTAGGTTCTCATCAGTATACAGAGGCACTAGGGTTGATGATGGTG
GATATGATGAAGATGAGGATATATTGTTAGACAAACAGAATACTGAAACATTCGGGGATGTATCTGGATCGTTCACTGCAGATGATCTGACCCGTGGTAA
AAGCAATGACACTGCCGGAGTATTGTCAACCTCTTCAGTGGATGACCCACAATGCTCTCAATCAAGTACTGGCTCAGATTTGCATCAGTCCAATGCTTAT
GAGCTTTCTAGACAAACTGCAGATGAAGTTCCTTCTAAAATTTCCAGTTTGGAAAGTGATGGAAGGAATCCAGATATTCTGCAAGTTGCTCATGCCGATG
ATAGCATTAAAGATCGTGTGGGAGAAAAAAAGGTAGCTCCAGATGCCAAATTTTCCAAGTTTGGAGAATCTCGATCTTCTGAGAGCAGCCAGAGTGCTTC
TGCTTATCCACCCTCGTCAAAAAGCCATGAAAAGGAAATATCGCCTACTGCTCTAGCTTCTAGTCGTCCTGCTTTATCTCCAAGCTCGTTCAGACCATTG
CAGTCATCACCACTTCGCCCTCCATCGCCAGTTCCCGATAGTTCCTTCTACTTCCCGCCCAATGTTACCACTGCACCACAAATGCATGGGATGCCGATGG
GCTTTGGAATGGGGCCATCATTCAGTGGGCATCAGCCTGTTATGTATAATCCACAAGTAGCATCGATGCAGCCACCTCAAGGCTATTTCCACCCTAATGG
GCCTCAGTATGGTCAGCAAATGCTTCTTGGCCATCCTAGACAAGTGTTGTACATGCCAGGCTACCAACCTGAGACACCTTACAAAGGACGTGAATTTTAG
AA sequence
>Lus10037656 pacid=23167157 polypeptide=Lus10037656 locus=Lus10037656.g ID=Lus10037656.BGIv1.0 annot-version=v1.0
MLLEAVNRAARVDHSDVVFKVDSSEVVTSIASNTRDSTMFASPFDHTESSSALGSRFSDLSTPSFFRRWSSDLLASVSSERNLHIPPLAHSALLPNPSKL
NPNFSIANSSPWLTGFRIFVGSSEGFRFLFPEVLLLRIGAAEMSIQQSVQPKSSTNGFNRRRTDREGGIRLDNKPQSGKFSQDRSINATGTGRTQVYESP
SRDRLVYLSTCLIGLPVEVQLKDGSMYCGTCYTTNVEKDFAIVLKMARLTKDVSHRGSKAAYVSKAPSKTLIIPGKDVAEVIAKDVPVTVDGLSNELQSE
RHQDILIDATISRSHHVDAERELEPWVPDGDDLQCPELENIFDGSWNRGWDQFETNKMLFGVKSTFDEELYTTKLEKGPRMRELEREAMRIAREIEGEET
KDLHLAEARGDHFDIDEETRFSSVYRGTRVDDGGYDEDEDILLDKQNTETFGDVSGSFTADDLTRGKSNDTAGVLSTSSVDDPQCSQSSTGSDLHQSNAY
ELSRQTADEVPSKISSLESDGRNPDILQVAHADDSIKDRVGEKKVAPDAKFSKFGESRSSESSQSASAYPPSSKSHEKEISPTALASSRPALSPSSFRPL
QSSPLRPPSPVPDSSFYFPPNVTTAPQMHGMPMGFGMGPSFSGHQPVMYNPQVASMQPPQGYFHPNGPQYGQQMLLGHPRQVLYMPGYQPETPYKGREF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G14010 CID4 CTC-interacting domain 4 (.1.2... Lus10037656
[exp]
0 1
AT5G12370 SEC10 exocyst complex component sec1... Lus10007908
[exp]
2.0 0.9240
AT3G14010 CID4 CTC-interacting domain 4 (.1.2... Lus10015638
[exp]
8.0 0.8987
AT3G11960 Cleavage and polyadenylation s... Lus10013542
[exp]
8.5 0.9184
AT4G30100 P-loop containing nucleoside t... Lus10020914
[exp]
10.0 0.9214
AT3G55320 ABCB20, PGP20 ATP-binding cassette B20, P-gl... Lus10040315
[exp]
10.6 0.9088
AT3G55320 ABCB20, PGP20 ATP-binding cassette B20, P-gl... Lus10023437
[exp]
10.7 0.8940
AT3G13530 MAPKKK7, MAP3KE... MAP3K EPSILON PROTEIN KINASE, ... Lus10010209
[exp]
11.2 0.9150
AT2G26890 KAM2, GRV2 KATAMARI2, GRAVITROPISM DEFECT... Lus10033077
[exp]
13.3 0.9193
AT2G07360 SH3 domain-containing protein ... Lus10008548
[exp]
14.0 0.9172
AT5G06600 AtUBP12, UBP12 ubiquitin-specific protease 12... Lus10029309
[exp]
17.1 0.8953

Lus10037656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.