Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13640 1037 / 0 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT3G44830 773 / 0 Lecithin:cholesterol acyltransferase family protein (.1) AT1G04010 85 / 7e-17 ATPSAT1 phospholipid sterol acyl transferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015639 [exp] 1292 / 0 AT5G13640 1053 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10021564 [exp] 994 / 0 AT5G13640 989 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10017165 [exp] 991 / 0 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10019519 [exp] 815 / 0 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10043360 [exp] 493 / 4e-169 AT3G44830 581 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10043361 [exp] 84 / 8e-19 AT5G13640 85 / 4e-20 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10024927 [exp] 85 / 8e-17 AT1G04010 1021 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10003615 [exp] 84 / 2e-16 AT1G04010 1005 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10008234 [exp] 82 / 1e-15 AT1G04010 991 / 0.0 phospholipid sterol acyl transferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G063100 [exp] 1092 / 0 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.001G171000 [exp] 1073 / 0 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.004G190100 [exp] 823 / 0 AT3G44830 911 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Potri.009G150800 [exp] 215 / 4e-66 AT3G44830 204 / 9e-63 Lecithin:cholesterol acyltransferase family protein (.1) Potri.014G195500 [exp] 89 / 3e-18 AT1G04010 1040 / 0.0 phospholipid sterol acyl transferase 1 (.1) Potri.015G121000 [exp] 51 / 2e-06 AT4G19860 781 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G076300 [exp] 48 / 2e-05 AT3G03310 632 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Potri.012G121596 [exp] 47 / 3e-05 AT4G19860 756 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10037657 pacid=23167093 polypeptide=Lus10037657 locus=Lus10037657.g ID=Lus10037657.BGIv1.0 annot-version=v1.0 ATGCCGGTAGTCCGCCGCCGAAAACCTTCTGAGTCCGACAAGCCATCCACATCGGCGCCTTCGGATGACGACATAAGCGGTGGAGGAACGACGACCGGGA AAGAGGAGGAAGGAGAAGACAGTAAGAGGAAGAACAAGAAGAGGCGGAAGAAGAAGCCTGCTGCCGATAAGCCTCCGCTACCCCCGGGTCCTTCTCCTGC AGGAGGAAACGACGACGATGGCAAACAAGAGGAGGAGGAGGAGGACAAAAAAGGAAGGCGGAGGAGGAGGAAGGCGTCGGCGGCGAAATGGTCGTGCGTG GACAGCTGCTGCTGGTTCGTCGGTTGTGTTTGTTTGACCTGGTGGGTGCTGCTGTTTCTATACAACGCTATGCCTGCTTCATTCCCGCAGTACGTCACTG AGGCGATCACGGGACCTTCGCCTGACCCGCCTGGGGTGAAGCTGAAGAAAGAAGGGCTCAGATCGAAGCATCCTGTGGTGTTTGTGCCAGGGATTGTGAC GGCTGGTTTGGAATTGTGGGAAGGTCATCAGTGTGCCGAAGGTTTGTTCCGGAAGCGGCTTTGGGGTGGGACTTTTGGCGAGGTTTATAAGAGGCCTTTG TGCTGGGTAGAGCACATGTCGTTAGATAACGAAACTGGATTAGATCCTCCCGGTATAAGGCTCAGGCCAGTATCTGGACTTGTAGCTGCTGATTACTTCG CTCCTGGATATTTCGTGTGGGCGGTTCTTATAGCCAACTTAGCGCGAATCGGTTACGAGGAGAATTCTATGTACATGGCCTCCTATGACTGGAGACTTTC ATTTCAGAACACAGAGGTTCGTGACAGAACGTTAAGCCGCATCAAGAGTAACATAGAATTGATGGTTGCTACCAATGGTGGGCATAAGGCAGTCATTATT CCACATTCTATGGGAGTCTTGTACTTTTTGCATTTCATGAAGTGGGTCGAGGCACCATCTCCAATGGGAGGTGGGGGTGGACCTGATTGGTGCTCTAAGC ATATCAAGGCAGTGATGAATATCGGTGGCCCGTTTTTAGGCGTTCCGAAAGCTGTTACTGGGCTTTTCTCTGCTGAAGCAAGGGATATCGCCGTTGTCAG CGGTATGAACGATATTGAATATGATCCTAGAAGGACTGCACTTCTTCATCCTCAAAGCCTGGCTCTCACTCCAGGTTTCTTGGACAATGATATATTCCGT CTCCAGACGTTACAGCATATAATGAGAATGTCTCGTACATGGGACTCAACCATGTCTATGATACCTAAAGGTGGAGATACTATTTGGGGCGATCTGGATT GGTCCCCCGAGGATGGCTGCTCTCCTAGTAAAAGAGGGCGGGGAAACAATGAAACTGAGAGTGATGATAACCTCGCTCAGACGACTAAAGTTCGCTATGG AAGGATTATATCGTTTGGGAAGGATGTAGCAGAGGCACCGTCATCAGAGATTGACAGGATAGATTTTAGGGACGCTCTTAAAGGTCAAAATGTTGCGAAC ACTAGCTGCCGGGACGTTTGGACAGAATACCATGACATGGGACTTGGAGGTATTAAAGCTGTAGCAGAATACAAGTCATACACTGCTGGATCCATCGTGG ACCTGCTTAGTTATGTTGCCCCGAAAATGATGGATCGTGGAAGCTGCCATTTCTCTTATGGAATTGCTGATGACCTTGATGATCCCAAGTACAACCATTT CAAATACTGGTCAAACCCCTTGGAAACAAAGTTACCAAATGCACCAGACATGGAAATATTCTCAATGTACGGAGTCGGTATCCCCACTGAAAGAGCTTAC GTTTACCGGTTATCTCCAGCTGGCGAATGCTACATCCCGTTCCAGATCGATACATCAGCAGATGAAGACAGTTGTCTGAAAGACGGAGTGTACACAGTCG ATGGGGATGAAACGGTTCCCGTGTTGAGCGCAGGATACATGTGTGCCAAAGGTTGGCGGGGGAAGACCCGGTTCAATCCTTCCGGAATAAGGACTTACAT AAGGGAGTATGATCATTCCCCTCCGGCAAACCTGCTCGAAGGCCGGGGAACCCAGAGTGGCGCCCATGTCGATATAATGGGGAACTTCGCACTGATCGAA GATATACTGAGGGTTGCTGCTGGTGGTACTGGTAAAGATCTTGATGGCGATCGTGTCTATTCCGATATTTTCAAGTGGTCTGATAGGATCAAGCTGAATC TCTAG
AA sequence Show only first row Show all	>Lus10037657 pacid=23167093 polypeptide=Lus10037657 locus=Lus10037657.g ID=Lus10037657.BGIv1.0 annot-version=v1.0 MPVVRRRKPSESDKPSTSAPSDDDISGGGTTTGKEEEGEDSKRKNKKRRKKKPAADKPPLPPGPSPAGGNDDDGKQEEEEEDKKGRRRRRKASAAKWSCV DSCCWFVGCVCLTWWVLLFLYNAMPASFPQYVTEAITGPSPDPPGVKLKKEGLRSKHPVVFVPGIVTAGLELWEGHQCAEGLFRKRLWGGTFGEVYKRPL CWVEHMSLDNETGLDPPGIRLRPVSGLVAADYFAPGYFVWAVLIANLARIGYEENSMYMASYDWRLSFQNTEVRDRTLSRIKSNIELMVATNGGHKAVII PHSMGVLYFLHFMKWVEAPSPMGGGGGPDWCSKHIKAVMNIGGPFLGVPKAVTGLFSAEARDIAVVSGMNDIEYDPRRTALLHPQSLALTPGFLDNDIFR LQTLQHIMRMSRTWDSTMSMIPKGGDTIWGDLDWSPEDGCSPSKRGRGNNETESDDNLAQTTKVRYGRIISFGKDVAEAPSSEIDRIDFRDALKGQNVAN TSCRDVWTEYHDMGLGGIKAVAEYKSYTAGSIVDLLSYVAPKMMDRGSCHFSYGIADDLDDPKYNHFKYWSNPLETKLPNAPDMEIFSMYGVGIPTERAY VYRLSPAGECYIPFQIDTSADEDSCLKDGVYTVDGDETVPVLSAGYMCAKGWRGKTRFNPSGIRTYIREYDHSPPANLLEGRGTQSGAHVDIMGNFALIE DILRVAAGGTGKDLDGDRVYSDIFKWSDRIKLNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10037657 [exp]	0	1
AT4G34760			SAUR-like auxin-responsive pro...		Lus10041921 [exp]	1.4	0.7790
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10015639 [exp]	2.4	0.7713
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10024466 [exp]	7.5	0.7382
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10035469 [exp]	12.4	0.7202
AT1G70590			F-box family protein (.1)		Lus10004621 [exp]	19.3	0.7088
AT3G12570		FYD	FYD (.1.2.3.4)		Lus10023420 [exp]	21.9	0.6645
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10039906 [exp]	23.2	0.7022
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10027727 [exp]	26.2	0.7022
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	26.4	0.7239
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10006248 [exp]	34.0	0.7041

Compare expression of checked genes

Lus10037657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.