Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13990 500 / 3e-163 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) AT3G07660 67 / 7e-11 Kinase-related protein of unknown function (DUF1296) (.1) AT5G46380 56 / 9e-08 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13222 54 / 5e-07 GIP1 GBF-interacting protein 1 (.1) AT4G18150 53 / 1e-06 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29370 50 / 9e-06 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29350 50 / 9e-06 Kinase-related protein of unknown function (DUF1296) (.1) AT1G55820 50 / 1e-05 Kinase-related protein of unknown function (DUF1296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015640 [exp] 1658 / 0 AT3G13990 561 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Lus10036414 [exp] 100 / 2e-21 AT3G07660 656 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10041089 [exp] 97 / 3e-20 AT3G07660 662 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004604 [exp] 72 / 1e-12 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10025382 [exp] 62 / 2e-09 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004543 [exp] 61 / 7e-09 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007338 [exp] 47 / 2e-06 AT1G29370 71 / 1e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10020762 [exp] 49 / 2e-05 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G170700 [exp] 793 / 0 AT3G13990 557 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.003G063300 [exp] 753 / 0 AT3G13990 619 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.014G169900 [exp] 88 / 2e-17 AT3G07660 491 / 1e-160 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G217000 [exp] 87 / 3e-17 AT3G07660 600 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G353100 [exp] 71 / 2e-12 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G370900 [exp] 70 / 7e-12 AT3G07660 124 / 3e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G078800 [exp] 67 / 3e-11 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G079800 [exp] 61 / 4e-09 AT3G07660 125 / 2e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G059300 [exp] 61 / 5e-09 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF06972 [flax] [poplar] DUF1296 Protein of unknown function (DUF1296)
Representative CDS sequence Show only first row Show all	>Lus10037658 pacid=23167009 polypeptide=Lus10037658 locus=Lus10037658.g ID=Lus10037658.BGIv1.0 annot-version=v1.0 ATGGTCGGCTCTGCTGTTGCCTCTTCAAGCAGCGGGGCTCAGTCGCAGCAGCAGCCACTACAGACGCAGAACCTGCCTCCTAAAGTGAGGAAGGCAATAC TGTCGATTAAAGAGATTGTCGGCGACTTCTCCGATAACGATATCTATATGACACTCCAGGAGAGTAATATGGACCTTAATGATGCTGCTCAGAAATTGCT TAATCAAGACCCCTTTCTTGAGGTGAAAAGAAGAAAAGATAGGAAGAAAGAGAATGCGGGTTATGTGGGTGCTTCAGAGTCCAGAAGAGGTTCTGAGAAT TTTAATCAGGGTTACAGGGGTGCTGCAGAGTCCAGAAGAGGTTCTGAGGATTTTAATCAGGGTTACAGGGTTCCTGCAGACTCCAGAAGAGGTTCTGAGA ATTTTAATCAGGGTCACAGGGGTCCTACAGAGTCCAGAAAAGGTTCTGAGAATTTTAATCAGGGTTACAAGGGTCCTGCAGAGTCCAGAAGAGGTTCTGA GAATTTTAATCAGGGTTACAGAGGTGCTGCAGAGTCCAGAAGAGGTTCTGAAGATGTTAATCCAGGTTACAGGGGTGCTGCAGATTCCAGAAGAGGTTCT GAGAACTTTAATCAAGGTGTTCGGACATTTACTGACCGCGGTGCTAGACGAGGAGGTTACGTACGCCATGTTGCCCCTAGTAGAGAGTTTCGTGTTGTGA GAGACAATAGAGTCAATGCAAATACAGCTAAAGAACTCAAGTCTGATTTGTCTCAAAGTTCATCATCCCATGGGCAAGGTGTTACTAATATCAAGGGTTC AGCTGCGTACTCAAGCACTGTAAAAGCGCCAGCTGAAAGACACCCATCTCAGGGTGCTAATGGGCCTATTGATTCTCAAGGTCCTCGACAAAATAGAGAT GCTAACGTAAGTGGAACTGACCGGAGATCTAATCTCGATGAGAAACGGGCAGTGACTCCGAATGCATCTTCACGTGTACAAGGAGGAAAACCTAATGCTT CTCAAAACCAATCTGCCACTGTCATTGGGGTGTATTCCTCGTCAACAGATCCTGTCCATGTTCCATCACCTGATTCCAGACCATCTGCTCCTGTTGGAGC TATTAAACGTGAAGTTGGTGTTGTAGGAGGTCGCCGTCAAACTTCTGGAAGTCCTATGATAAATTTGTCTGTACCTAGTTCAGCATTGGCGAAGGAGAGT TCTTTGACAGAGACATTCCAACCTTTTCTTGCAATACCTAAGAAAGAACAAGCAAGTCAAGCTAATGCAGCTGATTCTACCGTGTCTGGTATTCCTGTCA ACAAACCATTTTTGGGAAGCCAGTTTAACAGCAGAACTCATCAGCAAGCTACAGGTCACCAAAAGGCTTCTCAGCATAATAAAGAGTGGAAACCAAAATC AAGCCAAAAGTCTGTTGCCAATGGTCCTGGAGTGATTGGAACACCTAAGAAATCGAGTTCACCTGTTACTGATAGTTCTAAGGACTCAGAACCTGTTGCA GTAGATCTGCATGATAAGCTTTCACTGGTGAACATAAACGAAAACCAGAACGTGATCATTGCACAACACATCCGAGTACCTGAAACCGACCGATGCAGGC TTACGTTTGGTAGTTTCGGGGTCGACCTTGATTCCACCAGGAATTTTGCATCTGGAGTTTCAGCAGTTGGATCTACAGAAGAAAACAATAGGGAATCTAC TGCAAGTATGACGGTGTCTGCTCCGGAGTCTACTGGTAATGATGCTTCTGGTACTAAGCATGACGAAATATCAAACGAGAAATTGAGATACTCTAGTTCA AATTCTCCATCTTCAGGTGGAGCATCTGAACTTCAGTTGCCTGATAAGTCTCCAAGTCCCCAGAACATGGATAGGTATGCTGATATTGGTTTGGTTCAAG AAAGCAGTCAATCTTATGATCACTCCGAGTCACAGCAGCAGCAAGATCCTCCTGAACTACAAACTTTCCAAGGGTATGATCACCAAACTGGTTATGACAT GTCATACTTTAGACCTTCGCTGGACGAAACAATGAGAGGACAGGGATTGCCTTCTCCACAAGAGCCTATAGCTTCGCACACAGCCAACAGCATTCCAGCA TCAACAATGCCGTCTGTACACCAGCAGCAGCACCCACAAATGGCCCAGATGTATCCACAAGTTCACATGCAGCACTATGCCAATATGATGCCATATCGCC AGTTCGTCTCTCCGGTTTACGTACCGCAGATGGCCATGCCTGCCTATTCCAGCAATCATGCATATCCACACCCATCAAATGGCAGCAGTTACGTGCTGAT GCCTGGAGGTAGCTCACACCTCAACACTAACGGGTTAAAGTATGGAGTTCAGCAGTTCAAGACAATTCCCGCTAGCAATCCCTCTGGTTTTGGAAACTAT GCAAGCTCAACTGGATACACAATTAACGCTCCCGGCATTGTTGGGAATGGAACTGGCCTTGAAGACTCCTCTCGGATTAAATACAAGGATGGAAACCTCT ATGTCCCAAATCCTCAGGCCGAGACATCCGAAATGTGGATTCAGAACCAAAGAGAGCTAGCCGGAATGCAATCCGCCCAATACTACCAACTGCAGAGCCA ACCCCCACACCCCACTGCCGCGGCTTATCTACCCTCTCACGCCAGCCACCCGTCATTCAATGCTGCTGTGGCACAATCTTCGCACATGCAGTACCCGGGT CTGTACCCTCCACAGCCAGCCGGGATGGCGAATCCCCACCACCTGGGCTCAGTGATGGGCGGTAACGTTGGAGTTGCCGCTGCGGCAGGAGTAGCTCCGC CTGGTGCTCAAGTCGGTGGCTACCATCACCAGCAGCAGCCTCAACTGAGTCATCTCAACTGGACCACCAACTTCTGA
AA sequence Show only first row Show all	>Lus10037658 pacid=23167009 polypeptide=Lus10037658 locus=Lus10037658.g ID=Lus10037658.BGIv1.0 annot-version=v1.0 MVGSAVASSSSGAQSQQQPLQTQNLPPKVRKAILSIKEIVGDFSDNDIYMTLQESNMDLNDAAQKLLNQDPFLEVKRRKDRKKENAGYVGASESRRGSEN FNQGYRGAAESRRGSEDFNQGYRVPADSRRGSENFNQGHRGPTESRKGSENFNQGYKGPAESRRGSENFNQGYRGAAESRRGSEDVNPGYRGAADSRRGS ENFNQGVRTFTDRGARRGGYVRHVAPSREFRVVRDNRVNANTAKELKSDLSQSSSSHGQGVTNIKGSAAYSSTVKAPAERHPSQGANGPIDSQGPRQNRD ANVSGTDRRSNLDEKRAVTPNASSRVQGGKPNASQNQSATVIGVYSSSTDPVHVPSPDSRPSAPVGAIKREVGVVGGRRQTSGSPMINLSVPSSALAKES SLTETFQPFLAIPKKEQASQANAADSTVSGIPVNKPFLGSQFNSRTHQQATGHQKASQHNKEWKPKSSQKSVANGPGVIGTPKKSSSPVTDSSKDSEPVA VDLHDKLSLVNINENQNVIIAQHIRVPETDRCRLTFGSFGVDLDSTRNFASGVSAVGSTEENNRESTASMTVSAPESTGNDASGTKHDEISNEKLRYSSS NSPSSGGASELQLPDKSPSPQNMDRYADIGLVQESSQSYDHSESQQQQDPPELQTFQGYDHQTGYDMSYFRPSLDETMRGQGLPSPQEPIASHTANSIPA STMPSVHQQQHPQMAQMYPQVHMQHYANMMPYRQFVSPVYVPQMAMPAYSSNHAYPHPSNGSSYVLMPGGSSHLNTNGLKYGVQQFKTIPASNPSGFGNY ASSTGYTINAPGIVGNGTGLEDSSRIKYKDGNLYVPNPQAETSEMWIQNQRELAGMQSAQYYQLQSQPPHPTAAAYLPSHASHPSFNAAVAQSSHMQYPG LYPPQPAGMANPHHLGSVMGGNVGVAAAAGVAPPGAQVGGYHHQQQPQLSHLNWTTNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13990			Kinase-related protein of unkn...		Lus10037658 [exp]	0	1
AT3G13990			Kinase-related protein of unkn...		Lus10015640 [exp]	1.0	0.9604
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10018357 [exp]	1.7	0.9227
AT5G48240			unknown protein		Lus10041095 [exp]	2.4	0.9246
AT4G10070			KH domain-containing protein (...		Lus10002947 [exp]	3.9	0.9208
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10041867 [exp]	5.7	0.9076
AT5G67610			Uncharacterized conserved prot...		Lus10019140 [exp]	5.8	0.8803
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	9.6	0.9212
AT5G14610			DEAD box RNA helicase family p...		Lus10001272 [exp]	9.9	0.8806
AT1G79150			binding (.1)		Lus10034234 [exp]	11.2	0.9067
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	11.8	0.8898

Compare expression of checked genes

Lus10037658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.