Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13980 127 / 1e-33 unknown protein AT1G54200 123 / 6e-32 unknown protein AT3G42800 49 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015641 [exp] 358 / 1e-123 AT3G13980 176 / 3e-52 unknown protein Lus10008457 [exp] 161 / 2e-46 AT3G13980 151 / 1e-42 unknown protein Lus10025011 [exp] 86 / 2e-18 AT3G13980 115 / 1e-28 unknown protein Lus10026463 [exp] 74 / 2e-14 AT1G54200 107 / 7e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G063400 [exp] 137 / 1e-36 AT1G54200 173 / 7e-50 unknown protein Potri.001G170500 [exp] 137 / 2e-36 AT1G54200 167 / 2e-47 unknown protein Potri.006G144700 [exp] 115 / 6e-29 AT3G13980 130 / 2e-34 unknown protein Potri.006G222700 [exp] 114 / 3e-28 AT1G54200 114 / 4e-28 unknown protein Potri.018G049900 [exp] 105 / 3e-25 AT1G54200 122 / 5e-31 unknown protein Potri.018G065000 [exp] 100 / 3e-23 AT3G42800 139 / 1e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037659 pacid=23167371 polypeptide=Lus10037659 locus=Lus10037659.g ID=Lus10037659.BGIv1.0 annot-version=v1.0 ATGGAGAGATCATCGTCGTCGTCCAGTTCTTACCGACGACATCACCAACATAGCAGATCAGACACCAGAAATAACCCTTCTTTCTCCTCCACTCTCCTCG ACTCCATCTACCGCTCCTTCGACGACCCCTCCTCCGCCGCCGTATCCACCGATCGCCGCCGCAACTCCCGCCCCCAAATACGCTGCGTTTCCGACGAAAA TATCAATACTACAACCCGACTCCGCCAAAACGGTGCGTTTCGGAGGAAATCAGTAGGGGCAGATATGATTTATTCGAGTTCCAGCTCGTCCGACTCGAGT TACGGCGCCGGTCTAACCGGGTTCGAGTCAGCTGACGACTCCAGATCCAATCTGAAACCGATTCGAACCTCCTCCTCCGCCTCCGCCGCCCAATCTCGGT CTGGTAACTGCAGATCTGACGGCGGAGGAGAATTTGTGAAGAAGAAATCTAGATCGTTGAAGAAAATGTACGGAGATCTGAAGAAAGCGAAGCATCCGCA GCAACCGCCGATTTCTCCCGGCGGCCGTCTTGCCAGCTTCTTGAACTCTCTGTTCACCGCCGGCAAAGACAAAAAGGCCAAGTTCGGCGGCGGAGGAGAC GAAATCCGGCCTTCTGACTCGTCGAATTGCTCATCGGCTTCCTCGTTGTCCCGCTCCTGCTTGAGCAAAACTCCTTCCTCCCGCGGCGGCGGGAAGAGAT CGGTGAGGTTTTACCCTGTGAACGTAATCGTCGACGAGGAATCCCGACCTTGCGGGAAGAGGAACGTAATGGAGGCGGAGAATGAGGAGCTTAAGCTGCG AGTTATGAAGGAGAGCCGCCGCGTGGAGGCGGCGGCGAGGGAGCTGCTGAAGAATTATAGCTGCCAGAGGAAGAGCGCTGACGTGGAGGATGAGGAAGAT GATGACGTGGCGAGCTGCGCCAGCTCGGATTTGTTTGAGCTGGATAATCTTTCGGCGATCGGAGGGATCGAACGGTACAGGGAAGAATTGCCGGTTTACG AGACTACACATCTGAGCGCGAATCATCGGACGGCTGGTTATTATTGCTAA
AA sequence Show only first row Show all	>Lus10037659 pacid=23167371 polypeptide=Lus10037659 locus=Lus10037659.g ID=Lus10037659.BGIv1.0 annot-version=v1.0 MERSSSSSSSYRRHHQHSRSDTRNNPSFSSTLLDSIYRSFDDPSSAAVSTDRRRNSRPQIRCVSDENINTTTRLRQNGAFRRKSVGADMIYSSSSSSDSS YGAGLTGFESADDSRSNLKPIRTSSSASAAQSRSGNCRSDGGGEFVKKKSRSLKKMYGDLKKAKHPQQPPISPGGRLASFLNSLFTAGKDKKAKFGGGGD EIRPSDSSNCSSASSLSRSCLSKTPSSRGGGKRSVRFYPVNVIVDEESRPCGKRNVMEAENEELKLRVMKESRRVEAAARELLKNYSCQRKSADVEDEED DDVASCASSDLFELDNLSAIGGIERYREELPVYETTHLSANHRTAGYYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13980			unknown protein		Lus10037659 [exp]	0	1
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10010638 [exp]	4.0	0.8142
AT5G43670			Sec23/Sec24 protein transport ...		Lus10022219 [exp]	5.4	0.8430
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10015013 [exp]	5.7	0.7967
AT1G65440		GTB1	global transcription factor gr...		Lus10029079 [exp]	6.0	0.7878
AT3G03770			Leucine-rich repeat protein ki...		Lus10020303 [exp]	7.7	0.8101
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10025995 [exp]	13.1	0.8096
AT2G42600		ATPPC2	phosphoenolpyruvate carboxylas...		Lus10029837 [exp]	17.7	0.7434
AT3G03770			Leucine-rich repeat protein ki...		Lus10005689 [exp]	18.2	0.8057
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10030005 [exp]	20.5	0.7991
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	23.0	0.7842

Compare expression of checked genes

Lus10037659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.