Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06530 322 / 6e-113 VPS2.1 SNF7 family protein (.1) AT1G03950 127 / 2e-36 VPS2.3 vacuolar protein sorting-associated protein 2.3 (.1) AT5G44560 119 / 4e-33 VPS2.2 SNF7 family protein (.1.2) AT5G22950 59 / 1e-10 VPS24.1 SNF7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015642 [exp] 352 / 4e-124 AT2G06530 338 / 1e-118 SNF7 family protein (.1) Lus10017166 [exp] 311 / 2e-108 AT2G06530 357 / 2e-126 SNF7 family protein (.1) Lus10021561 [exp] 147 / 7e-45 AT2G06530 194 / 1e-63 SNF7 family protein (.1) Lus10021562 [exp] 134 / 1e-40 AT2G06530 134 / 3e-41 SNF7 family protein (.1) Lus10033914 [exp] 103 / 3e-27 AT1G03950 278 / 5e-96 vacuolar protein sorting-associated protein 2.3 (.1) Lus10038407 [exp] 100 / 1e-25 AT5G44560 323 / 5e-113 SNF7 family protein (.1.2) Lus10023396 [exp] 83 / 1e-18 AT5G44560 270 / 2e-91 SNF7 family protein (.1.2) Lus10003538 [exp] 45 / 2e-06 AT1G03950 121 / 3e-36 vacuolar protein sorting-associated protein 2.3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G170400 [exp] 323 / 5e-113 AT2G06530 326 / 2e-114 SNF7 family protein (.1) Potri.018G065100 [exp] 320 / 3e-112 AT2G06530 332 / 9e-117 SNF7 family protein (.1) Potri.011G154700 [exp] 132 / 4e-38 AT5G44560 331 / 1e-116 SNF7 family protein (.1.2) Potri.001G442500 [exp] 129 / 3e-37 AT5G44560 328 / 3e-115 SNF7 family protein (.1.2) Potri.005G227000 [exp] 124 / 5e-35 AT1G03950 309 / 3e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.002G035900 [exp] 120 / 2e-33 AT1G03950 308 / 8e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.006G144300 [exp] 70 / 1e-15 AT2G06530 62 / 7e-13 SNF7 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [flax] [poplar] PspA PF03357 [flax] [poplar] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Lus10037660 pacid=23167327 polypeptide=Lus10037660 locus=Lus10037660.g ID=Lus10037660.BGIv1.0 annot-version=v1.0 ATGAGTTTTCTCTTCGGTAACAGAAAGACTCCCGCCGAGCTGTTGAGGGAGAACAAGCGGATGATCGACAAGTCAATAAGGGACATAGAGAGGGAAAGGC AAGGTCTCCAAACTCAGGAGAAGAAGCTCATCGCTGAGATCAAGAAGAATGCTAAGAATGGTCAGATGGGAGCTGTAAGAGTGATGGCAAAAGATCTTAT CAGAACAAGGCACCAGATTGAGAAGTTCTATAAGCTCAAATCACAACTCCAGGGTGTCTCCTTGAGAATACAGACGTTGAAATCGACTCAGGCAATGGGG GAGGCGATGAAAGGTGTGACGAAAGCGATGGGGCAGATGAACAGGCAGATGAACTTGCCATCTCTTCAGAAAATAATGCAGGAATTCGAGAGGCAGAACG AGAAAATGGAGATGACTTCGGAGGTGATGGGAGACGCCATCGACGATGCCCTTGACGGAGATGAAGAAGAGGAGGAAACCGACGAGCTCGTGAGCCAAGT TCTTGACGAGATTGGTATCGATATTAACAACGAGCTGGTTACTGCTCCTTCGACAACTGTGTCGGCCGCACCGGCTGGAAGGAACAAAGTTGCTCAGACT GAATCGACTGGGAATCATGAAGATGGCGGGGGTCTAGATGATGACTTGCAGGCAAGGTTAGACAACTTGAGGAAGATGTGA
AA sequence Show only first row Show all	>Lus10037660 pacid=23167327 polypeptide=Lus10037660 locus=Lus10037660.g ID=Lus10037660.BGIv1.0 annot-version=v1.0 MSFLFGNRKTPAELLRENKRMIDKSIRDIERERQGLQTQEKKLIAEIKKNAKNGQMGAVRVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMG EAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMTSEVMGDAIDDALDGDEEEEETDELVSQVLDEIGIDINNELVTAPSTTVSAAPAGRNKVAQT ESTGNHEDGGGLDDDLQARLDNLRKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10037660 [exp]	0	1
AT3G05010			Protein of unknown function, t...		Lus10018985 [exp]	1.4	0.9159
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10015642 [exp]	1.7	0.9056
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000408 [exp]	2.2	0.9199
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10003699 [exp]	4.0	0.8942
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10013897 [exp]	4.0	0.8992
AT1G18720			Protein of unknown function (D...		Lus10036771 [exp]	4.5	0.8908
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10021385 [exp]	4.6	0.8948
AT5G23760			Copper transport protein famil...		Lus10039224 [exp]	4.9	0.8879
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10017822 [exp]	5.0	0.8982
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019447 [exp]	6.7	0.8804

Compare expression of checked genes

Lus10037660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.