Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20630 182 / 7e-58 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G72610 181 / 9e-58 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT3G62020 134 / 4e-39 GLP10 germin-like protein 10 (.1.2) AT3G05930 132 / 2e-38 GLP8 germin-like protein 8 (.1) AT1G09560 125 / 1e-35 GLP5 germin-like protein 5 (.1) AT5G39160 125 / 2e-35 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 124 / 3e-35 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT1G02335 123 / 6e-35 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G39130 122 / 2e-34 RmlC-like cupins superfamily protein (.1) AT5G26700 122 / 2e-34 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015643 [exp] 383 / 2e-137 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037663 [exp] 323 / 1e-113 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015644 [exp] 289 / 4e-100 AT5G20630 192 / 6e-62 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020026 [exp] 283 / 8e-98 AT5G20630 190 / 3e-61 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020851 [exp] 281 / 8e-97 AT5G20630 181 / 2e-57 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037664 [exp] 263 / 5e-90 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10036296 [exp] 221 / 2e-73 AT5G20630 213 / 3e-70 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10002795 [exp] 211 / 2e-69 AT1G72610 261 / 3e-89 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10022020 [exp] 199 / 1e-64 AT5G20630 282 / 2e-97 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065266 [exp] 213 / 3e-70 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.001G169000 [exp] 206 / 1e-67 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 188 / 1e-60 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.010G238200 [exp] 124 / 2e-35 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.005G001300 [exp] 124 / 4e-35 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.002G184900 [exp] 123 / 6e-35 AT3G62020 332 / 3e-117 germin-like protein 10 (.1.2) Potri.014G110400 [exp] 122 / 2e-34 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2) Potri.011G163800 [exp] 122 / 2e-34 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G162200 [exp] 122 / 2e-34 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G000500 [exp] 121 / 2e-34 AT1G09560 311 / 1e-108 germin-like protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10037661 pacid=23167019 polypeptide=Lus10037661 locus=Lus10037661.g ID=Lus10037661.BGIv1.0 annot-version=v1.0 ATGTCGTTTCATTCTCATCAATTCCCCTTCCTCTTCGCCACTTTTCTCTGTCTCCACTACTCCGCACGCGCCGCGGATTTCTGCGTGGCGGAACTAACCA CCCAAACCCCGTCGGGCTACGCCTGCAAGGACCCGGCTAAAGTCGTTGCCGGGGACTTCGTCTTCACCGGAATAACCAAACCGGGCAACACCAGCAACCC CAACAAGGCAGTTGGGGTCCTGGGCTTGGTCCAACAATTTCCGGCCCTGAATGGTCTGGGACTCTCCATATTTCGCGCCGATTTTGCGCCGGGCGGCGTG ATCCAACTGCACACCCACCCGGCGGCATCGGAGTTGGTCTACGTGGCAGAGGGGACCCTCACGGTGGGGTTCGTCGCTGCGGATACGAACAAGGTGTACG TGAATACGATCAAGAAAGGGGAAGTTACGGTGTTTCCTCAGGGACTGCTGCATTTCGTGGTGAATGCTGATACCGTCAGGCCGGCCATGACGGTGGTGGT GTTCAGCAGTCCGGAACCGGGGAATCAGTTGGTGAGTTCTGCGCTCTTCGGGAATGATCTCGCGTCGGCTTTGGTGGAAAGGACGACCGGCATTGGTGAA TCCGAAGTGAAACGGCTCAAAGCGCTTCTCGGTGGTACCGGCTAA
AA sequence Show only first row Show all	>Lus10037661 pacid=23167019 polypeptide=Lus10037661 locus=Lus10037661.g ID=Lus10037661.BGIv1.0 annot-version=v1.0 MSFHSHQFPFLFATFLCLHYSARAADFCVAELTTQTPSGYACKDPAKVVAGDFVFTGITKPGNTSNPNKAVGVLGLVQQFPALNGLGLSIFRADFAPGGV IQLHTHPAASELVYVAEGTLTVGFVAADTNKVYVNTIKKGEVTVFPQGLLHFVVNADTVRPAMTVVVFSSPEPGNQLVSSALFGNDLASALVERTTGIGE SEVKRLKALLGGTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037661 [exp]	0	1
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10006505 [exp]	3.5	0.9211
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	3.6	0.9344
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	4.7	0.9328
AT2G01300			unknown protein		Lus10004062 [exp]	6.6	0.9201
AT3G61930			unknown protein		Lus10030203 [exp]	6.9	0.9101
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042078 [exp]	9.8	0.9134
AT1G20180			Protein of unknown function (D...		Lus10010144 [exp]	10.6	0.9131
AT1G20180			Protein of unknown function (D...		Lus10017348 [exp]	14.0	0.8399
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10037465 [exp]	16.0	0.8895
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10033040 [exp]	17.3	0.8672

Compare expression of checked genes

Lus10037661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.