Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20630 123 / 2e-36 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G72610 114 / 1e-32 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT3G62020 95 / 2e-25 GLP10 germin-like protein 10 (.1.2) AT1G02335 89 / 8e-23 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT1G10460 87 / 4e-22 GLP7 germin-like protein 7 (.1) AT3G05930 80 / 3e-19 GLP8 germin-like protein 8 (.1) AT5G26700 79 / 4e-19 RmlC-like cupins superfamily protein (.1) AT1G09560 79 / 4e-19 GLP5 germin-like protein 5 (.1) AT3G10080 79 / 5e-19 RmlC-like cupins superfamily protein (.1) AT3G04200 78 / 1e-18 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015644 [exp] 243 / 2e-83 AT5G20630 192 / 6e-62 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020026 [exp] 205 / 2e-68 AT5G20630 190 / 3e-61 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037663 [exp] 196 / 8e-65 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020851 [exp] 192 / 2e-63 AT5G20630 181 / 2e-57 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037661 [exp] 186 / 9e-61 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015643 [exp] 181 / 8e-59 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015645 [exp] 176 / 2e-57 AT5G20630 98 / 4e-33 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037664 [exp] 139 / 2e-42 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10002795 [exp] 134 / 2e-40 AT1G72610 261 / 3e-89 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065266 [exp] 138 / 5e-42 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.001G169000 [exp] 135 / 3e-41 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 124 / 9e-37 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.010G038200 [exp] 100 / 4e-27 AT1G10460 249 / 4e-84 germin-like protein 7 (.1) Potri.010G238200 [exp] 93 / 1e-24 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.008G020800 [exp] 89 / 5e-23 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.014G110400 [exp] 83 / 1e-20 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2) Potri.002G184900 [exp] 82 / 3e-20 AT3G62020 332 / 3e-117 germin-like protein 10 (.1.2) Potri.011G163216 [exp] 79 / 5e-19 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 79 / 5e-19 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10037662 pacid=23167124 polypeptide=Lus10037662 locus=Lus10037662.g ID=Lus10037662.BGIv1.0 annot-version=v1.0 ATGGCCAGGGCAGATTTCATCCCCGGTGGGGTGATCCCGCTTCACACCCACCCAGCGGCAACCGAGATAGCATACCTCATCGATGGGTCCGTCACAGTGG GGTTCGTCACCCCGGGGACGAACAAGGTGTACCTGAATACGATCAAGAAGGGTGAAGTGACGGTGTTTCCTCAGGGGACCCCGCATTTCGTGGTGAATCT TGATACGGCGAGGCCTGCTACTGCGGTGGTCGGATTTAGTAGCCCCGAACCGGGGAATTTGATTGTGAGTTTGGCCATGTTTGGGAATGATTTGCCGTCG GTTTTGCTTGAGAGGTCGACTGGCATTGCTGATGCTGAAGTGAAGAGGCTTAAAGCTCTTCTTGGTGGTTCTGGCTGA
AA sequence Show only first row Show all	>Lus10037662 pacid=23167124 polypeptide=Lus10037662 locus=Lus10037662.g ID=Lus10037662.BGIv1.0 annot-version=v1.0 MARADFIPGGVIPLHTHPAATEIAYLIDGSVTVGFVTPGTNKVYLNTIKKGEVTVFPQGTPHFVVNLDTARPATAVVGFSSPEPGNLIVSLAMFGNDLPS VLLERSTGIADAEVKRLKALLGGSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037662 [exp]	0	1
AT1G04910			O-fucosyltransferase family pr...		Lus10030093 [exp]	6.0	0.8710
AT5G46060			Protein of unknown function, D...		Lus10013943 [exp]	9.9	0.9050
AT2G01300			unknown protein		Lus10004062 [exp]	11.1	0.8883
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	16.8	0.8899
AT3G52460			hydroxyproline-rich glycoprote...		Lus10004193 [exp]	17.0	0.8629
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10016569 [exp]	21.9	0.8497
AT2G05910			Protein of unknown function (D...		Lus10033432 [exp]	22.4	0.8960
AT3G49700		AtACS9, ACS9, E...	ETHYLENE OVERPRODUCING 3, 1-am...		Lus10007714 [exp]	27.7	0.8113
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Lus10013211 [exp]	29.5	0.7720
AT2G46150			Late embryogenesis abundant (L...		Lus10007904 [exp]	29.5	0.8707

Compare expression of checked genes

Lus10037662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.