Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20630 187 / 7e-60 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G72610 169 / 4e-53 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT1G02335 137 / 3e-40 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT3G62020 136 / 6e-40 GLP10 germin-like protein 10 (.1.2) AT3G05930 129 / 2e-37 GLP8 germin-like protein 8 (.1) AT5G39160 128 / 6e-37 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 128 / 9e-37 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT3G04200 127 / 2e-36 RmlC-like cupins superfamily protein (.1) AT5G26700 126 / 4e-36 RmlC-like cupins superfamily protein (.1) AT3G05950 126 / 7e-36 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037661 [exp] 298 / 7e-104 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015643 [exp] 298 / 1e-103 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020026 [exp] 295 / 3e-102 AT5G20630 190 / 3e-61 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015644 [exp] 292 / 2e-101 AT5G20630 192 / 6e-62 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020851 [exp] 270 / 2e-92 AT5G20630 181 / 2e-57 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037664 [exp] 228 / 7e-76 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015645 [exp] 212 / 9e-70 AT5G20630 98 / 4e-33 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10036296 [exp] 212 / 1e-69 AT5G20630 213 / 3e-70 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037662 [exp] 196 / 1e-64 AT5G20630 124 / 2e-36 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G169000 [exp] 201 / 2e-65 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.003G065266 [exp] 201 / 2e-65 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 174 / 4e-55 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.011G163800 [exp] 134 / 3e-39 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.010G238200 [exp] 132 / 1e-38 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 131 / 4e-38 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 131 / 4e-38 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.008G020800 [exp] 130 / 8e-38 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 129 / 2e-37 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 129 / 3e-37 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10037663 pacid=23167127 polypeptide=Lus10037663 locus=Lus10037663.g ID=Lus10037663.BGIv1.0 annot-version=v1.0 ATGTCGTCTCACACGTATAAATTCGTCTTTTTCGCCATCTTCCTCCTCTCATATTGCTACTCAGTACGCGCCGCAGATTTCTGCGTGGCTGATCTATCCC TCCAGACCCCCTCCGGCTACGCCTGCAAGGACCCCACCAAAGTCGTCGCTGACGACTTCGTCTTCACCGGTATATCCAAACCGGGCAACACCACCAACCC CAACAAGGCAGCTGCCACCCCGGCCTTTGTCCACCAATTCCCAGCCTTGAACGGGCTGGGAATCTCCTTAGCACGGGCTGATTTCGCCCCGGGAGGGGTG ATCCCGCTCCACACCCACCCGAGGGCCACCGAGATGGCCTACCTGGTGGAGGGGACCCTCATGGTGGGGTTTGTGGCAGCGGCGACCAACAAGGTGTATG TAAATACGATCAAAAGGGGGGAAGTGACGGTGTTCCCTCAGGGGATGCCGCATTTCGTGGTAAATGCAGATAGGAAAAGGCCCGCTGTGGCGCTTGTGGC GTTCAGCAGTCCCGATCCGGGGAATCTATTGGTGAGTTCTGCGCTGTTTGGGAATGATCTCGCGTCGGCTTTGGTGGAGAAGACGACCGGCATTAGTGAA ACCGAAGTGAAAAGACTTAAAGCTCTTTTCGGTGGTTCGGGTTAA
AA sequence Show only first row Show all	>Lus10037663 pacid=23167127 polypeptide=Lus10037663 locus=Lus10037663.g ID=Lus10037663.BGIv1.0 annot-version=v1.0 MSSHTYKFVFFAIFLLSYCYSVRAADFCVADLSLQTPSGYACKDPTKVVADDFVFTGISKPGNTTNPNKAAATPAFVHQFPALNGLGISLARADFAPGGV IPLHTHPRATEMAYLVEGTLMVGFVAAATNKVYVNTIKRGEVTVFPQGMPHFVVNADRKRPAVALVAFSSPDPGNLLVSSALFGNDLASALVEKTTGISE TEVKRLKALFGGSG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037663 [exp]	0	1
					Lus10038768 [exp]	1.4	0.9322
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003444 [exp]	2.0	0.9426
AT1G06330			Heavy metal transport/detoxifi...		Lus10020704 [exp]	4.5	0.9289
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030460 [exp]	4.9	0.9295
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10038109 [exp]	5.8	0.9043
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10008038 [exp]	6.0	0.9130
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10034374 [exp]	7.7	0.9259
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	9.2	0.9282
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10006199 [exp]	11.2	0.9235
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10027819 [exp]	15.2	0.8821

Compare expression of checked genes

Lus10037663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.