Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20630 197 / 3e-64 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G72610 195 / 5e-63 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT5G39160 131 / 4e-38 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 131 / 5e-38 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT3G10080 130 / 1e-37 RmlC-like cupins superfamily protein (.1) AT1G18980 129 / 2e-37 RmlC-like cupins superfamily protein (.1) AT5G39130 129 / 4e-37 RmlC-like cupins superfamily protein (.1) AT1G02335 127 / 2e-36 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT1G09560 125 / 9e-36 GLP5 germin-like protein 5 (.1) AT5G26700 125 / 1e-35 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015646 [exp] 293 / 4e-101 AT1G72610 138 / 2e-40 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10036296 [exp] 268 / 1e-91 AT5G20630 213 / 3e-70 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037661 [exp] 263 / 5e-90 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015643 [exp] 263 / 7e-90 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037663 [exp] 256 / 4e-87 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015644 [exp] 243 / 1e-81 AT5G20630 192 / 6e-62 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020026 [exp] 240 / 1e-80 AT5G20630 190 / 3e-61 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020851 [exp] 234 / 2e-78 AT5G20630 181 / 2e-57 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037665 [exp] 219 / 1e-72 AT1G72610 179 / 1e-56 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065266 [exp] 248 / 6e-84 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.001G169000 [exp] 236 / 2e-79 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 206 / 1e-67 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.010G238200 [exp] 144 / 4e-43 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.008G020800 [exp] 143 / 8e-43 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.011G162200 [exp] 143 / 1e-42 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.011G163800 [exp] 137 / 2e-40 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.001G464100 [exp] 137 / 3e-40 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464000 [exp] 136 / 4e-40 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.011G163200 [exp] 134 / 3e-39 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10037664 pacid=23167186 polypeptide=Lus10037664 locus=Lus10037664.g ID=Lus10037664.BGIv1.0 annot-version=v1.0 ATGCCGTTTCAATCTCTTCACTTCTCCATCCTCCTCGCCGCCCTCTTCTCCTCTTACTACTCCGCACACGCCGCGGATTTCTGCATCGCCGACCTAACAA CCCAAACGGCATCAGGATTCGCATGCAAGAACCCATCAAACGTCACCGTTTCCGACTTTGTCTTCACCGGCCTGATCAACCCCGGCAACACCACCAACAT GAACAAGGCATCCGCGATCCCGGGGTTCGTCCAGCAGTTCCCTGCCCTAAACGGGTTGGGGCTCGGTCTGGTTCGAGCCGACATCGAGCCGGGCGGTGCG ATCCCGCTGCACACCCACCCGGCCGCCACGGAGATGCTCTACATGGTGGAAGGGACCATCGTGACCGGGTTCATCTCCGGGGCGGCCAACGTAGCGTATG TGACCAAGTTGAAGAAAGGTGAAGTTATGGTTTACCCACGAGGGTTGTTCCATTTTCAGGTGAACACCGGGACGGAGCATGCAATGGAGATCGCTTGCTT CAGCGACTCGGAACCAGGCGTTCAGTTGGTGAGCTCGGCACTGTTTGGGAACGATTTCACGTCATTTTTGGTCGAGAAGACGACCAACATCGATGAAGCC GAGGTGAAGAAGCTCAAGGCACTTCTTGGTGGTTCCGGCTAA
AA sequence Show only first row Show all	>Lus10037664 pacid=23167186 polypeptide=Lus10037664 locus=Lus10037664.g ID=Lus10037664.BGIv1.0 annot-version=v1.0 MPFQSLHFSILLAALFSSYYSAHAADFCIADLTTQTASGFACKNPSNVTVSDFVFTGLINPGNTTNMNKASAIPGFVQQFPALNGLGLGLVRADIEPGGA IPLHTHPAATEMLYMVEGTIVTGFISGAANVAYVTKLKKGEVMVYPRGLFHFQVNTGTEHAMEIACFSDSEPGVQLVSSALFGNDFTSFLVEKTTNIDEA EVKKLKALLGGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037664 [exp]	0	1
AT1G71320			F-box family protein (.1)		Lus10038210 [exp]	1.0	0.9843
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10015196 [exp]	1.4	0.9568
AT1G13610			alpha/beta-Hydrolases superfam...		Lus10019205 [exp]	2.2	0.9517
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10029443 [exp]	2.8	0.9526
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10005943 [exp]	7.7	0.9492
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10035890 [exp]	9.4	0.9003
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10018637 [exp]	11.0	0.9529
AT1G52190			Major facilitator superfamily ...		Lus10038614 [exp]	12.2	0.9299
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10028263 [exp]	12.7	0.9485
AT4G11950			Protein of unknown function (D...		Lus10002998 [exp]	13.7	0.9174

Compare expression of checked genes

Lus10037664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.