Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72610 165 / 2e-51 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT5G20630 157 / 4e-48 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT5G26700 111 / 2e-30 RmlC-like cupins superfamily protein (.1) AT1G18980 110 / 9e-30 RmlC-like cupins superfamily protein (.1) AT1G18970 107 / 2e-28 GLP4 germin-like protein 4 (.1) AT3G10080 104 / 2e-27 RmlC-like cupins superfamily protein (.1) AT3G05950 104 / 2e-27 RmlC-like cupins superfamily protein (.1) AT5G61750 103 / 3e-27 RmlC-like cupins superfamily protein (.1) AT5G38960 102 / 2e-26 RmlC-like cupins superfamily protein (.1) AT5G39110 100 / 4e-26 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036296 [exp] 238 / 1e-79 AT5G20630 213 / 3e-70 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015647 [exp] 213 / 3e-70 AT1G72610 184 / 8e-59 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10037666 [exp] 212 / 1e-69 AT1G72610 181 / 9e-58 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10037664 [exp] 204 / 1e-66 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037661 [exp] 179 / 1e-56 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037663 [exp] 177 / 4e-56 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015643 [exp] 175 / 3e-55 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10010769 [exp] 169 / 1e-52 AT5G20630 283 / 7e-98 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10022020 [exp] 168 / 2e-52 AT5G20630 282 / 2e-97 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G169000 [exp] 187 / 4e-60 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.003G065266 [exp] 187 / 7e-60 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 164 / 4e-51 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.015G068200 [exp] 108 / 3e-29 AT1G18980 247 / 2e-83 RmlC-like cupins superfamily protein (.1) Potri.002G184900 [exp] 108 / 3e-29 AT3G62020 332 / 3e-117 germin-like protein 10 (.1.2) Potri.014G110400 [exp] 108 / 4e-29 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2) Potri.011G163800 [exp] 108 / 6e-29 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 105 / 4e-28 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.005G001300 [exp] 105 / 5e-28 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.011G163200 [exp] 105 / 5e-28 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10037665 pacid=23167350 polypeptide=Lus10037665 locus=Lus10037665.g ID=Lus10037665.BGIv1.0 annot-version=v1.0 ATGCACAAGATCCATCTCATAACCCTCCTAGCTCTCTTCATCACCACCACCACATTCCCCAAATCCGCACACCCCGCGGATTTCTGCGTCGCCGACCTAA CCCTCCCGCAAACCCCGCACGGATACCAATGCAAACACCCCACAACCGTCACTGCCGACGACTTCGTCCACTCCGGCCTCACCACAGGCGGGACCACCAA AAACATCAACAAGGGCAACGTGACCCGTGCCTTTGTCCAGCAGTTCCCGGGCCTGAACTCGTTGGACCTGGCTGCGGTCAGGGTGGACCTGGAGCCGGAC GGTGCGGTCCACCTCCACAGCCACGCATACTCGTCGGAGATGATACTTGTGGTGCAAGGAACCGTCACGGCAGGGTTTGTGTCCGGGCTGGGGACCTACA ACAATACCGTGTACGTCAAGAAACTTAAGAAATGGGAGCTTATGGTGATTCCTCAGGGGCTGGTTCATTTCCAAGTGAACATGGGGAGTCGACACGCTAC GATGTACGTTTCGTTCGCGAAGGCTGATCCGGGTGCTCAGTTTATGAGCTCGGCGTTCTTTGGGAATGATCTTTCGTCGTTGTTTGTCGCGAAGGGGACG AATATCGGGGTGAAGGAAGTTAAGAGGGTTAAGGCTTTGCTTGGGGGGTCTGGCTGA
AA sequence Show only first row Show all	>Lus10037665 pacid=23167350 polypeptide=Lus10037665 locus=Lus10037665.g ID=Lus10037665.BGIv1.0 annot-version=v1.0 MHKIHLITLLALFITTTTFPKSAHPADFCVADLTLPQTPHGYQCKHPTTVTADDFVHSGLTTGGTTKNINKGNVTRAFVQQFPGLNSLDLAAVRVDLEPD GAVHLHSHAYSSEMILVVQGTVTAGFVSGLGTYNNTVYVKKLKKWELMVIPQGLVHFQVNMGSRHATMYVSFAKADPGAQFMSSAFFGNDLSSLFVAKGT NIGVKEVKRVKALLGGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10037665 [exp]	0	1
AT2G37900			Major facilitator superfamily ...		Lus10012663 [exp]	3.3	0.9416
					Lus10041251 [exp]	9.5	0.9216
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	11.8	0.9263
AT2G37870			Bifunctional inhibitor/lipid-t...		Lus10031925 [exp]	13.0	0.9166
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10023873 [exp]	14.5	0.9158
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	15.1	0.9213
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10019645 [exp]	18.4	0.8081
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	19.9	0.9158
AT4G23610			Late embryogenesis abundant (L...		Lus10027179 [exp]	23.0	0.9101
AT1G31490			HXXXD-type acyl-transferase fa...		Lus10023806 [exp]	23.2	0.9065

Compare expression of checked genes

Lus10037665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.