Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72610 181 / 9e-58 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT5G20630 178 / 2e-56 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G18980 124 / 3e-35 RmlC-like cupins superfamily protein (.1) AT1G18970 121 / 4e-34 GLP4 germin-like protein 4 (.1) AT3G05930 117 / 1e-32 GLP8 germin-like protein 8 (.1) AT5G26700 116 / 2e-32 RmlC-like cupins superfamily protein (.1) AT3G62020 116 / 3e-32 GLP10 germin-like protein 10 (.1.2) AT1G02335 114 / 2e-31 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT3G10080 112 / 8e-31 RmlC-like cupins superfamily protein (.1) AT5G61750 111 / 2e-30 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015647 [exp] 394 / 1e-141 AT1G72610 184 / 8e-59 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10036296 [exp] 242 / 2e-81 AT5G20630 213 / 3e-70 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037665 [exp] 221 / 2e-73 AT1G72610 179 / 1e-56 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10037664 [exp] 218 / 7e-72 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015643 [exp] 189 / 1e-60 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037663 [exp] 184 / 9e-59 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10010769 [exp] 184 / 2e-58 AT5G20630 283 / 7e-98 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037661 [exp] 183 / 3e-58 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10022020 [exp] 182 / 7e-58 AT5G20630 282 / 2e-97 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G169000 [exp] 191 / 1e-61 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.003G065266 [exp] 189 / 1e-60 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 173 / 2e-54 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.015G068200 [exp] 127 / 1e-36 AT1G18980 247 / 2e-83 RmlC-like cupins superfamily protein (.1) Potri.008G020800 [exp] 126 / 4e-36 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.005G001300 [exp] 120 / 1e-33 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.014G110400 [exp] 119 / 2e-33 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2) Potri.010G238200 [exp] 119 / 2e-33 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.002G184900 [exp] 118 / 7e-33 AT3G62020 332 / 3e-117 germin-like protein 10 (.1.2) Potri.011G163800 [exp] 111 / 2e-30 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10037666 pacid=23167262 polypeptide=Lus10037666 locus=Lus10037666.g ID=Lus10037666.BGIv1.0 annot-version=v1.0 ATGGAAACCAAACTCCAACTCCTCATTCTCACAATCCTCTTCCTCACCCAATCCGCTCACGCCGCGGATTTCTGCGTCGCCGACCTAACCTCCCGGGAAA CCTCCACCGGCTACCCATGCAAAAGCCCCTCAAACGTCACCGTCAACGACTTCGTCTTCACGGGCTTCACCGCCCCCTTAAGCACTTCCAACCCAAACAA GCTCTCCCTGAACCGGGCCTTTGTCAAGAGCTTCCCGGCCCTCAACGGGCTGGACCTGGCCGCGGTCAGGGTGGACATGGAGCGGGACGGGGTGGTTCCG CTCCATTCCCACCCGTACTCTCCCGAGATGATCTTCATCGTCGAAGGGAGAGTAACGGCCGGGTTCGTGTCCGGGCTGGACTCGAACGTGGCCTACATCA AGACGCTGAACAAGGGAGAGATGATGGTGATTCCGCAAGGGTTCCTCCATTTTCAGGCCAACAGTGGGCCCGGGAATGCGACCATATTTGTGAATTTTAA CAAGGCGGATCCTGGAGTGCAGTTTATCACCGGGGCGCTGTTCAGGAATGCTTTTCCGACATGGCTTTTGGAGAAGACGACTGGGATTAGTCAGGGTGAG ATCAGGAATCTTAAGAATCTTCATGGTGGGTCCGGCTAA
AA sequence Show only first row Show all	>Lus10037666 pacid=23167262 polypeptide=Lus10037666 locus=Lus10037666.g ID=Lus10037666.BGIv1.0 annot-version=v1.0 METKLQLLILTILFLTQSAHAADFCVADLTSRETSTGYPCKSPSNVTVNDFVFTGFTAPLSTSNPNKLSLNRAFVKSFPALNGLDLAAVRVDMERDGVVP LHSHPYSPEMIFIVEGRVTAGFVSGLDSNVAYIKTLNKGEMMVIPQGFLHFQANSGPGNATIFVNFNKADPGVQFITGALFRNAFPTWLLEKTTGISQGE IRNLKNLHGGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10037666 [exp]	0	1
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10037113 [exp]	7.9	0.9976
AT1G12980	AP2_ERF	DRN, ESR1	ENHANCER OF SHOOT REGENERATION...		Lus10014345 [exp]	11.1	0.9963
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10043149 [exp]	11.2	0.9976
					Lus10006079 [exp]	13.7	0.9976
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10029103 [exp]	14.0	0.8874
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10023578 [exp]	15.9	0.9976
AT1G15780			unknown protein		Lus10023978 [exp]	17.7	0.9976
					Lus10025056 [exp]	19.4	0.9976
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10012046 [exp]	20.8	0.9888
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Lus10006384 [exp]	20.9	0.9228

Compare expression of checked genes

Lus10037666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.