Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13960 145 / 2e-41 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G06200 122 / 4e-34 GRF ATGRF6 growth-regulating factor 6 (.1) AT4G37740 117 / 4e-30 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G22840 113 / 7e-29 GRF ATGRF1 growth-regulating factor 1 (.1) AT2G36400 106 / 8e-27 GRF ATGRF3 growth-regulating factor 3 (.1) AT5G53660 102 / 2e-25 GRF ATGRF7 growth-regulating factor 7 (.1) AT3G52910 100 / 2e-24 GRF ATGRF4 growth-regulating factor 4 (.1) AT4G24150 94 / 8e-22 GRF ATGRF8 growth-regulating factor 8 (.1) AT2G45480 82 / 1e-17 GRF ATGRF9 growth-regulating factor 9 (.1) AT1G09060 44 / 0.0001 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015651 [exp] 391 / 9e-140 AT3G13960 155 / 5e-45 growth-regulating factor 5 (.1) Lus10020352 [exp] 144 / 2e-41 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10004455 [exp] 144 / 3e-41 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1) Lus10009533 [exp] 144 / 5e-40 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10033441 [exp] 141 / 2e-39 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10000473 [exp] 140 / 4e-39 AT3G13960 187 / 5e-55 growth-regulating factor 5 (.1) Lus10014380 [exp] 112 / 4e-30 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10011559 [exp] 111 / 3e-28 AT2G22840 290 / 3e-92 growth-regulating factor 1 (.1) Lus10019275 [exp] 110 / 6e-28 AT2G22840 283 / 1e-89 growth-regulating factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G065400 [exp] 152 / 3e-44 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.001G169100 [exp] 151 / 3e-44 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.006G143200 [exp] 150 / 3e-43 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1) Potri.003G065000 [exp] 149 / 3e-43 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.013G077500 [exp] 140 / 8e-40 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 137 / 6e-39 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.002G115100 [exp] 130 / 1e-34 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.012G022600 [exp] 127 / 5e-34 AT5G53660 137 / 1e-35 growth-regulating factor 7 (.1) Potri.001G132600 [exp] 124 / 1e-33 AT4G37740 142 / 6e-38 growth-regulating factor 2 (.1) Potri.014G012800 [exp] 126 / 2e-33 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC PF08880 [flax] [poplar] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Lus10037668 pacid=23167336 polypeptide=Lus10037668 locus=Lus10037668.g ID=Lus10037668.BGIv1.0 annot-version=v1.0 ATGATGAGTACAAGAACAACAAACAGCAATTCGTCCTCTTGTTCTTCACCATTCACAGCAACACAGTGGCAAGAACTGGAGAACCAAGCTCTGATCTACA AGTACATGGTCTCCGGCCTCCCAATCCCACCTCAGCTCCTCTCCCCACTCACTTGGGGATCATGTTTCCAAGTGGGTTTTTCTAAAAAGACAGATCCAGA GCCTGGAAGGTGCAGGAGAACCGACGGCAAGAAATGGAGGTGTTCGAAGGAAGCTTACCCCGATTCGAAATACTGCGAGCGGCACATGCATAGGGGGAAG AATCGATCGAGAAAGGCCACGGTGGATGTTTCGAGTTCTTCGTCGTATGCTCAGAATGTTTTGTCGAATGTGAATGCTGTTGGTGGAATCAATCAGTATG GACAGAGTGCTCTGTTCATGGACTCTGCTGCTAACTCTGTATCTTCTCCTTGTCAGGTTCATCTTCCTGATTATAACAGGTACGTTCATGGAGTGAAAGT GGAAGACAACATGCAGCATCAACTCTCATCATCATCATCATCATCCAAAGGGTACTACTGCTCTCCACAGTCAGATCTTCAGAGCTTTCCCTACCCATCA ATGAGGCCAATTAGTTACAGTCATGAAACCCAGAAGCCTTTGCACCAGTTCTTTGGTGGCACCACTGATCACTCTTGGCTGGATCTTGCATCAAGTTCAA GACCTTCTTAA
AA sequence Show only first row Show all	>Lus10037668 pacid=23167336 polypeptide=Lus10037668 locus=Lus10037668.g ID=Lus10037668.BGIv1.0 annot-version=v1.0 MMSTRTTNSNSSSCSSPFTATQWQELENQALIYKYMVSGLPIPPQLLSPLTWGSCFQVGFSKKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGK NRSRKATVDVSSSSSYAQNVLSNVNAVGGINQYGQSALFMDSAANSVSSPCQVHLPDYNRYVHGVKVEDNMQHQLSSSSSSSKGYYCSPQSDLQSFPYPS MRPISYSHETQKPLHQFFGGTTDHSWLDLASSSRPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10037668 [exp]	0	1
AT4G34880			Amidase family protein (.1)		Lus10002804 [exp]	1.4	0.9181
AT5G62360			Plant invertase/pectin methyle...		Lus10032233 [exp]	2.4	0.8731
AT1G13790		FDM4	factor of DNA methylation 4, X...		Lus10032933 [exp]	2.6	0.8729
AT1G04150			C2 calcium/lipid-binding plant...		Lus10000164 [exp]	7.2	0.9063
AT1G79060			unknown protein		Lus10031795 [exp]	20.6	0.8735
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	22.1	0.8895
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10002538 [exp]	24.5	0.8594
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10028748 [exp]	24.7	0.8696
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10004455 [exp]	24.8	0.8468
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10028302 [exp]	31.5	0.7649

Compare expression of checked genes

Lus10037668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.