Plant FIBer expression Database

Lus10037669 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54215 43 / 2e-05 proline-rich family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015652
[exp]
92 / 7e-24 AT1G54215 45 / 3e-06 proline-rich family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G064900
[exp]
61 / 5e-12 AT1G54215 49 / 2e-07 proline-rich family protein (.1)
Potri.001G169200
[exp]
46 / 1e-06 AT1G54215 43 / 2e-05 proline-rich family protein (.1)
PFAM info
Representative CDS sequence
>Lus10037669 pacid=23167030 polypeptide=Lus10037669 locus=Lus10037669.g ID=Lus10037669.BGIv1.0 annot-version=v1.0
ATGGAGATTCGAGCTTCATGCTCAGTAATCGTGGTTCTATGGCTTGGGTTAGCCTTTTTTTGGGCCCTTGTCGAGTCTCAGCACATTGTATCGAAGTCAA
CGTCGTCGCCGACGACGACGAGGTCAACCCCGCCGCCGCCTAAAACCAAAAAACTATCTCCGCCGACGAAGAAACACGCTAAAGAGGAGAATTTATTCTC
CAATAATGACCAGAAACGGCCGCCGGCGAAGAAAAGTCACGAGAAAGCGAAATCAAAATCCCACGACGATGACGACGAGGATCATGAAACAGAGGATCGT
GAAACAGAGCATGATAATGATCATCATGATAAGAAAGAGGAGCAGAGGGAGAAGAAGAAGAAGAAGAAGATGAACGTAGGGAAGGTGACCGGAATGGTGT
TCTTGGGGATTGCAGGGGCAATGCAAGTAGGGGTTGTTGGGTTTTTGGTTTTCAAGAGGAATCAGCTGATGATGATCGAAGATAGATATGAACCTTACTC
TACTTCATGA
AA sequence
>Lus10037669 pacid=23167030 polypeptide=Lus10037669 locus=Lus10037669.g ID=Lus10037669.BGIv1.0 annot-version=v1.0
MEIRASCSVIVVLWLGLAFFWALVESQHIVSKSTSSPTTTRSTPPPPKTKKLSPPTKKHAKEENLFSNNDQKRPPAKKSHEKAKSKSHDDDDEDHETEDR
ETEHDNDHHDKKEEQREKKKKKKMNVGKVTGMVFLGIAGAMQVGVVGFLVFKRNQLMMIEDRYEPYSTS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G54215 proline-rich family protein (.... Lus10037669
[exp]
0 1
AT1G12980 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION... Lus10014345
[exp]
1.0 0.9967
AT1G76420 NAC NAC368, CUC3, A... CUP SHAPED COTYLEDON3, Arabido... Lus10013205
[exp]
1.7 0.9947
AT5G02030 HD PNY, BLR, BLH9,... VAAMANA, REPLUMLESS, PENNYWISE... Lus10004688
[exp]
2.0 0.9956
AT2G42560 late embryogenesis abundant do... Lus10002197
[exp]
3.2 0.9926
AT1G73620 Pathogenesis-related thaumatin... Lus10031346
[exp]
3.5 0.9940
AT3G18960 B3 AP2/B3-like transcriptional fa... Lus10012046
[exp]
4.5 0.9909
Lus10021217
[exp]
6.0 0.9923
AT4G16295 SPH1 S-protein homologue 1 (.1) Lus10042506
[exp]
6.0 0.9911
AT5G01150 Protein of unknown function (D... Lus10003168
[exp]
7.5 0.9920
AT1G29140 Pollen Ole e 1 allergen and ex... Lus10013681
[exp]
16.6 0.9794

Lus10037669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.