Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72560 1410 / 0 PSD PAUSED, ARM repeat superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015655 [exp] 1098 / 0 AT1G72560 838 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G066200 [exp] 1485 / 0 AT1G72560 1451 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3) Potri.001G168100 [exp] 1462 / 0 AT1G72560 1420 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3) Potri.019G052100 [exp] 44 / 0.0006 AT5G17020 1919 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Lus10037671 pacid=23167184 polypeptide=Lus10037671 locus=Lus10037671.g ID=Lus10037671.BGIv1.0 annot-version=v1.0 ATGGATGATCTTGAAAAGGCTGTGCTTATCAGTTTCGATGAATCCGGTTCTGTTGATGCCGCACTGAAATCTCAGGCGGTTGCCTACTGCCAGCAGATGA AGGAGAATCCGACTGTGGGCAGGCTCTGCATCGAGAAGCTTGTGTTCTGCAAGCTCGTGCAAGTCCAGTTCTGGTGTTTGCAGACTCTTCACGAGGTCAT TAGTTTGAAGTACAGTCTATTGAGTTTGGAAGAGAAGGGTTTTTTCAGGAAGTCTGTTTTCTCATTGTGTGGTTTCGATGGAGGGGTTGTTGATGGTAGT GAGAATAATGCTGTAAGATTCCTTGAAGGTCCTGCATTTATAAAGAACAAGCTTGCTCAGGTTTTGGTTACGTTAATCTATCTAGAGTACCCTTCAGTGT GGCCTTCCGTGTTTGTTGATCTGTTGCCTCAGTTGAGCAAAGGGGCATTGGTGATTGACATGTTTTGCCGTGTTTTGAATGCCTTGGATGATGAATTGAT CAGTCTGGATTACACAAGGACTCCGGAGGAGATGTCTGCAGCTAGCCGGGTTAAGGATGCGATGAGGCAGCAGTGTATAGGGCAGATAGTGAGAGCTTGG TATGACATTGTATGTATGTATAGGAATTCTGATGATCAAGAGCTTTGTTCGAACGTTTTGGATACCATGAGCAGGTACATCTCGTGGATCGATATCGGAC TGGTTATGAATGATGTGTTTATGTCCTTGTTGTTTGAGTTGATCCTTACTGAAGGGGGTTCGGAGCAGGTTCGGGGATCGGCCTGTTGTTGTGTTCTTGC TGTCGTTTCTAAGCGGATGGATCCGCAATCTAAGATGAACATATTGCAAGGCCTTCAGATTCGTAGGGTTTTCGGCTTGGTGACTGGGGATAGTGACTCT GAGCTAGTGCCGAAAGTGGTCGGCTTGTTAACTGGTTATGCGGTGGAGGTTTTAGAATGCAACAAGCGGGTCAGCACTGAGGATGGTAAAAGGATATCAA CCGAGCTTTTGAATGAAGTTCTGCCCTCAGTTTTTTATGTAATGCAGAACTGTGAGGTTGATGCTACTTTTAGTATAGTTCAGTTTTTGTCGGGCTATGT GGCCACTATGAAGAGCCTTTCTCCGTTGACGGAGAAACAATTGCTTCACGTTCGCCAGATATTGGAAGTTATTCGTTTGCAGATTCGTTATGATCCTGCA TATAGGAACAGTCTTGATATGCTTGATAAGATTGGAAGAGAAGAGGAAGATAGGATGGTGGAATTCAGGAAAGACCTTTTTGTGTTGCTCTCTAGTGTGG GTCGCGCTGCCCCTGAAGTCACTCAAGTTTTTATAAGAAATGCACTGGATAGTGCCGTTGCCTCTTCATCCGACGTAAATGTTGAGGAAGTGGAAGCTGC CCTTTCTCTTTTGCATGCTCTTCGAGAGTCATTAAGTGACGAATCCATAAAGAATGGATCTTTTTTGCTGAGTGAACTGATCCCAATGTTGATCTCAACA AGATTTCCCTGCCATTCTAGTAGACTAGTTGCCCTTGTGTATTTGGAGACTATTACCAGATATATGAAGTTTGTGATGGAGAAGACTCAATATATTCCCA TGGTACTGACCGCCTTTTTGGACGGGAGGGGGATACACCACCAGAACCTCCATGTGAGCCGCAGAGCAAGTTACCTTTTTATGCGAGTTGTGAAATTGCT TAAATCAAAACTCGTACCTTTCATAGAGACCATTTTGCAGAGCCTCCAAGATACGGTTGCCCGGTTCACAAGTATGGACTGTTCCTCTAATCAGTATTCA GGATCTGAAGATGGCAGCCATATATTTGAGGCAATTGGTATATTAATTGGGATGGAAGATGTACCACTGGAAAAGCAATCCGAGTACTTGGCTTCCTTGC TAACTCCTCTTTGTCGTCAGATTGAGGTGGTGCTTATGAATGCCAAGACACTGAATCCAGAAGAATCTCATGCAAAGATTGATAACGTTCAGCAGATAAT AATGGCAATTAATGCCCTCAGCAAGGGTTTCAGCGAGCGGCTTGTAACTGGTAGCCGGCCAGCAATTGGTCTAATGTTCAAGCAGACATTGGACGCTCTC CTCCAAATTCTTGTAGCATTTCCCAAAATAGAACCTATCCGGAGCAAGGTTACTTCTTTTATCCATCGCATGGTAGACACATTAGGGGAGTCTGTGTTTC CTTATCTTCCCAAGGCATTGGAACAATTACTTGCAGAAAGCGAGACGAAGGAAATGGTTGGTTTACTTGTACTGCTTAATCAGCTCATATGCAAATTCAA CATCGCAGTACACAGCATTCTGGAGGAAGTTTTCCCAGCAATTGCTGGTAGGATCTTTTCTATCATTCCGAGAAACGGTTTTCCTTCAGGACCTGGAACC AATACCGAGGAAATGAGGGAACTGCAAGAACTACAGAGAACGTTGTACACGTTTCTCCACGTGATGGCAACCCATGGTCTATCTTCAATTTTCCTCTTGA CGAAAAGTCGAGTTTATTTGGAGCCGATGATGCAGTTACTGCTTTACACAGCTTGTGATCATAAGGATAGCCTTGTTAGAAAGGCATGTGTTCAGATTTT CATCAGACTAATCAAAGACTGGTCTGTACCTTATGGCGAAGAGAAGGTGCCAGGTTTCCAAACTTTTGTGATTGAAGTCTTTGCAACGAACTGCTGCTTG TACAGTGTACTCGACAAATCCTTCGAGTTCCGCGATGCAAAGACGCACAATCTATTCGGAGAGATAGTTCAGGCTCAGAAGATCATGTATGAGAAGTTCG GTAACGATTTTCTTTTCCACTTCATATCTAAAAGCCTTAGCTCTTCACATTGCCCTCCGGAATTAGCAGAACAGTACTGCCAAAAGTTGCAGGGTACCGA TATCAAAGCTTTCAGATCCTTTTACCAGTCTCTGATCGAGAAACTTAGAGGTCAACAGAACGGAAACCTCGTTTTCAGATAG
AA sequence Show only first row Show all	>Lus10037671 pacid=23167184 polypeptide=Lus10037671 locus=Lus10037671.g ID=Lus10037671.BGIv1.0 annot-version=v1.0 MDDLEKAVLISFDESGSVDAALKSQAVAYCQQMKENPTVGRLCIEKLVFCKLVQVQFWCLQTLHEVISLKYSLLSLEEKGFFRKSVFSLCGFDGGVVDGS ENNAVRFLEGPAFIKNKLAQVLVTLIYLEYPSVWPSVFVDLLPQLSKGALVIDMFCRVLNALDDELISLDYTRTPEEMSAASRVKDAMRQQCIGQIVRAW YDIVCMYRNSDDQELCSNVLDTMSRYISWIDIGLVMNDVFMSLLFELILTEGGSEQVRGSACCCVLAVVSKRMDPQSKMNILQGLQIRRVFGLVTGDSDS ELVPKVVGLLTGYAVEVLECNKRVSTEDGKRISTELLNEVLPSVFYVMQNCEVDATFSIVQFLSGYVATMKSLSPLTEKQLLHVRQILEVIRLQIRYDPA YRNSLDMLDKIGREEEDRMVEFRKDLFVLLSSVGRAAPEVTQVFIRNALDSAVASSSDVNVEEVEAALSLLHALRESLSDESIKNGSFLLSELIPMLIST RFPCHSSRLVALVYLETITRYMKFVMEKTQYIPMVLTAFLDGRGIHHQNLHVSRRASYLFMRVVKLLKSKLVPFIETILQSLQDTVARFTSMDCSSNQYS GSEDGSHIFEAIGILIGMEDVPLEKQSEYLASLLTPLCRQIEVVLMNAKTLNPEESHAKIDNVQQIIMAINALSKGFSERLVTGSRPAIGLMFKQTLDAL LQILVAFPKIEPIRSKVTSFIHRMVDTLGESVFPYLPKALEQLLAESETKEMVGLLVLLNQLICKFNIAVHSILEEVFPAIAGRIFSIIPRNGFPSGPGT NTEEMRELQELQRTLYTFLHVMATHGLSSIFLLTKSRVYLEPMMQLLLYTACDHKDSLVRKACVQIFIRLIKDWSVPYGEEKVPGFQTFVIEVFATNCCL YSVLDKSFEFRDAKTHNLFGEIVQAQKIMYEKFGNDFLFHFISKSLSSSHCPPELAEQYCQKLQGTDIKAFRSFYQSLIEKLRGQQNGNLVFR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Lus10037671 [exp]	0	1
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Lus10015655 [exp]	1.4	0.9420
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10008369 [exp]	8.8	0.9259
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10013625 [exp]	12.0	0.9362
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032834 [exp]	12.4	0.9337
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10028871 [exp]	13.0	0.9255
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10003868 [exp]	15.0	0.9315
AT5G65450		UBP17	ubiquitin-specific protease 17...		Lus10015894 [exp]	20.0	0.9215
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	21.2	0.9298
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024282 [exp]	22.6	0.9155
AT3G58560			DNAse I-like superfamily prote...		Lus10016206 [exp]	24.8	0.9084

Compare expression of checked genes

Lus10037671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.