Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54130 862 / 0 AT-RSH3, RSH3, ATRSH3 RELA/SPOT homolog 3 (.1) AT3G14050 833 / 0 AT-RSH2, RSH2, ATRSH2 RELA-SPOT HOMOLOG 2, RELA/SPOT homolog 2 (.1) AT4G02260 233 / 1e-65 AT-RSH1, RSH1, ATRSH1 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) AT3G17470 150 / 5e-38 ATCRSH Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015656 [exp] 1320 / 0 AT1G54130 895 / 0.0 RELA/SPOT homolog 3 (.1) Lus10001862 [exp] 991 / 0 AT1G54130 867 / 0.0 RELA/SPOT homolog 3 (.1) Lus10022102 [exp] 874 / 0 AT1G54130 801 / 0.0 RELA/SPOT homolog 3 (.1) Lus10003599 [exp] 197 / 7e-55 AT4G02260 643 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10002139 [exp] 156 / 3e-39 AT1G54130 167 / 7e-43 RELA/SPOT homolog 3 (.1) Lus10028191 [exp] 123 / 3e-29 AT3G17470 671 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10042894 [exp] 100 / 8e-22 AT3G17470 350 / 6e-114 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10011252 [exp] 83 / 6e-18 AT1G54130 87 / 5e-20 RELA/SPOT homolog 3 (.1) Lus10008755 [exp] 68 / 8e-12 AT1G54130 72 / 1e-13 RELA/SPOT homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168200 [exp] 976 / 0 AT1G54130 953 / 0.0 RELA/SPOT homolog 3 (.1) Potri.003G066000 [exp] 955 / 0 AT1G54130 901 / 0.0 RELA/SPOT homolog 3 (.1) Potri.014G126700 [exp] 230 / 1e-64 AT4G02260 1305 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.013G089000 [exp] 179 / 6e-47 AT1G54130 164 / 8e-42 RELA/SPOT homolog 3 (.1) Potri.010G002400 [exp] 140 / 7e-35 AT3G17470 688 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF04607 [flax] [poplar] RelA_SpoT Region found in RelA / SpoT proteins CL0237 [flax] [poplar] HD_PDEase PF01966 [flax] [poplar] HD HD domain
Representative CDS sequence Show only first row Show all	>Lus10037672 pacid=23167301 polypeptide=Lus10037672 locus=Lus10037672.g ID=Lus10037672.BGIv1.0 annot-version=v1.0 ATGGCGGTTCCGACGACGATTGCTCTGTACGCGAGCCCGCCGAGCACGATATGCTCGGCTCCGAACCACTGCTCGATTTCCACTGCTCATGACTTCGAGC TGAATCCTCGATCTTCCTCGTCTGCTTCCGCTTCTGCTTCGAGTTCATCGTCGTACAGATCGCAGATCGGAGGGCTGTCGTGCTTGTTCTCTTCCCCCGG AGTGAAGCGCTCGTCGTTCTCCGGCGACAGGGAGGAGCTGAATGCTCTGTGGCATGATAGAGGCGAGGAATTGAAGGAATTTGGGAGCAGTTCGTTTAGG AAGTCTTCGAGTAAGTTTGGTGGTGGTGGTGGTGGTGGATCATCTTCGATGATGAAGAAGGAATCGAGTCCTGTATCAGTGTTGCATGCTCCAATGTCGT GTTCCACCAGTCCTCCTTCCACGAGGCTAGCTCGTGAAAGGAATGGTGGTGGTGGTGGTGGTGGTGATGTTTGCTTTCCCAGCTCGATTCGATCCGGATC GTCGAACAGGCTGTTTGATGGATTTGTGACTCATGCATTAGGGTCTTGTGTTGACTATGATGCTACTGGAGATGAATTAACATTTAACATGGAGGATAGT GGCATTGTGGATGATCATGAGCCTTATGTTAAGGAGCTTTTGTTGGGTGCTCAACTTAGGCACAAGATCTTCTGTGAAGAGTTCGTCATCAAGGCGTTTT ACGAGGCTGAGAAAGCTCATAGAGGGCAGATTCGGGCAAGTGGCGATCCTTACCTGCAGCATTGTGTTGAGACCGCGGTTATCCTCGCGACGATTGGAGC TAACGCCACTATGGTTGCTGCAGGGCTTTTACATGATACTCTTGACGATTCTTTCTTAAGCTATGACTCCATTGCCAAAGCTTTCGGAGCTGGAGTTGCT GATTTGGTTGAAGGGGTTTCGAAGCTGAGTCACTTGAGCAAGCTGGCGCGAAAGAACGACACAGCTAGCAGAACGGTTGAGGCGGATCGATTGCACACCA TGTTCCTGGCAATGGCGGATGCTAGAGCTGTACTGATCAAGTTAGCAGATCGGTTACACAACATGATGACTCTGGATGCACTTCCCTTGCTGAAGCAACA CAGGTTTGCAAAGGAGACATTGGAGGTATTCGCTCCTTTAGCGAATCGTTTGGGGATCTCTGCGTGGAAGGAGCAGCTGGAAAACTTGTGCTTCAAGCAT CTGAACCCTGATCAGCACAAGGAGCTGTCGTCTCAGCTTGTGAAATCTTTCGACGAGGAAGTGATTACTTCCGCGACGGACAAGTTGGGCAGGGCCTTGG ATGATGAAGCTATAGGCTATCATGTGTTGTCTGGTCGGCATAAAAGCTTGTATAGTATCTATCGCAAAATGTTGAAGAAGAAGCTGAAGATGGACGAGAT CCACGACATTCACGGGCTACGTTTGATCGTGAAGAATAAGGAAGATTGTTTCAGGGCATTGAGAGTTGTTCATGAATTGTGGCCTGAAGTACCCGGAAAG TTCAAGGACTACGTAAGCCGCCCCAAATTCAACGGGTATCAGTCTCTTCACACGGTAGTGATGGGCGATGGATATATCCCGCTCGAAGTGCAGATCCGAA CGAAGGAGATGCATCTGCAGGCCGAACTTGGATTCGCTGCTCATTGGAGATACAAAGAAGGTGATAGCAAACACCCTTCGTTCGTGTTGCAGATGGTCGA ATGGGCCCGATGGGTCGTAACTTGGCAATGCGAAACCATGAACAAAGACCGGTCGGATCCCGGAACCCAAACTTGCACCTTCCCTGTCCATTCGGAAGAT TGCAAGTACTCTTGCAAACCGAACTGCGGCCAGGACGAGCCGGTCTTCATCATCATGATCGAGAACGATAAGATGTCGGTCCAAGAGCTGCCAGCGAATT CATCAGTCATCGATCTGCTGGAACAAGCTGGGCGAGGTAGTAGCATGAGACGGGCATCGTATGGATACCCGGTGAAAGAAGAACTGAGGCCGAGACTCAA TCATAACCCGGTGAGCGATCCTACTTGCAAGCTGAAGATGGGAGATGTGGTGGAGCTAAGTCCTGCAATTCCTGCGAAATCGTTAACCAAGTACAGGGAG AAGATCCAGCGTATGTATGACTACCGAGGATCGAGTAGTAGCGTTGCGCCGACTACTGCCAGTAGTGTTTCGGGTTGA
AA sequence Show only first row Show all	>Lus10037672 pacid=23167301 polypeptide=Lus10037672 locus=Lus10037672.g ID=Lus10037672.BGIv1.0 annot-version=v1.0 MAVPTTIALYASPPSTICSAPNHCSISTAHDFELNPRSSSSASASASSSSSYRSQIGGLSCLFSSPGVKRSSFSGDREELNALWHDRGEELKEFGSSSFR KSSSKFGGGGGGGSSSMMKKESSPVSVLHAPMSCSTSPPSTRLARERNGGGGGGGDVCFPSSIRSGSSNRLFDGFVTHALGSCVDYDATGDELTFNMEDS GIVDDHEPYVKELLLGAQLRHKIFCEEFVIKAFYEAEKAHRGQIRASGDPYLQHCVETAVILATIGANATMVAAGLLHDTLDDSFLSYDSIAKAFGAGVA DLVEGVSKLSHLSKLARKNDTASRTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLLKQHRFAKETLEVFAPLANRLGISAWKEQLENLCFKH LNPDQHKELSSQLVKSFDEEVITSATDKLGRALDDEAIGYHVLSGRHKSLYSIYRKMLKKKLKMDEIHDIHGLRLIVKNKEDCFRALRVVHELWPEVPGK FKDYVSRPKFNGYQSLHTVVMGDGYIPLEVQIRTKEMHLQAELGFAAHWRYKEGDSKHPSFVLQMVEWARWVVTWQCETMNKDRSDPGTQTCTFPVHSED CKYSCKPNCGQDEPVFIIMIENDKMSVQELPANSSVIDLLEQAGRGSSMRRASYGYPVKEELRPRLNHNPVSDPTCKLKMGDVVELSPAIPAKSLTKYRE KIQRMYDYRGSSSSVAPTTASSVSG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10037672 [exp]	0	1
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008828 [exp]	3.5	0.8312
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10025311 [exp]	3.6	0.8616
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031862 [exp]	11.0	0.8048
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10009984 [exp]	11.0	0.8089
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10015656 [exp]	11.2	0.7624
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10015192 [exp]	12.1	0.8381
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029232 [exp]	19.2	0.8145
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10024422 [exp]	20.5	0.8282
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10023527 [exp]	22.8	0.7891
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10013979 [exp]	23.5	0.8183

Compare expression of checked genes

Lus10037672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.