Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72050 348 / 1e-118 C2H2ZnF TFIIIA transcription factor IIIA (.1.2) AT5G04240 50 / 1e-06 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT4G06634 50 / 2e-06 C2H2ZnF zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) AT3G48430 47 / 2e-05 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015657 [exp] 585 / 0 AT1G72050 394 / 9e-136 transcription factor IIIA (.1.2) Lus10011009 [exp] 48 / 5e-06 AT4G06634 378 / 7e-130 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Lus10043332 [exp] 42 / 0.0007 AT3G48430 877 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10019482 [exp] 42 / 0.001 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G108600 [exp] 424 / 4e-149 AT1G72050 410 / 3e-142 transcription factor IIIA (.1.2) Potri.019G081100 [exp] 404 / 6e-141 AT1G72050 413 / 2e-143 transcription factor IIIA (.1.2) Potri.004G221700 [exp] 55 / 4e-08 AT4G06634 432 / 4e-151 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Potri.003G010400 [exp] 51 / 6e-07 AT4G06634 408 / 7e-142 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Potri.012G092400 [exp] 45 / 7e-05 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.008G037800 [exp] 44 / 0.0002 AT5G04240 997 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.015G089000 [exp] 42 / 0.0007 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037673 pacid=23167323 polypeptide=Lus10037673 locus=Lus10037673.g ID=Lus10037673.BGIv1.0 annot-version=v1.0 ATGGAGAAAGAGATGGAAGAAGCTCAGGATTCCACATACACCACCACCTCCGACATCAGGCGGTACTTGTGCAAATACTGCGGAATTTCCCGATCTAAGA AGTATCTCATCTCGTCCCACATCCTTTCTCATCACAAGGATGAGATGAGCGACGAAGAAGAAGAAGCAGAAGAAGGGACGAAATCCAACACTTGTGAAGA GTGTGGAGCTTGCTTCAGGAAGCCTGCGTATCTGAGAGAACACATTCGGAGTCACTCCCTTGAGAGGCCGTTTAAGTGCACTGTTGAAGGATGTCATGCC AGTTACAGGAGGAAGGATCACTTGAACCGTCATTTGCTTCAGCACAAAGAGAAGCTTTTCAAATGTCCAGTCGAGAGCTGTACCAGGGAGTTTGTATTAG AAAGTGATGTGGAGGGGCATGTTCGGGACAAACATTGCAAATCCGCCGGGGCAGATGGCTTAAAGCAGTACGTGTGTGAGGAGCCTGGTTTGAAACTGGA TTCTATCGAAGCCGTCTGTCTAGAACCGGGCTGTGGAAAGAATTTCTCAAACGAACAGTGCCTTAAAGCACATATTCAAGCATCCCACCAACACATCAAC TGTGAGATATGTGGGAGTAAGCACTTGAAGAAGAACATCAAGAGACATCTCCGAAGCCATGAGGCCGTTAGTGAATCAACACAGAGAGTTTCGTGTGGTC ACGATGGCTGTGGCCTCACGTTTTCATCCAAAACGAATCTTAACAAGCATGTTAAGGCTGTTCATCTCGAAGCTAAGCCTTTCGCTTGCGGGTTTCCTCC ATGTGGAATGAGATTCTCGTACAAACACGTTAGGGACAATCACGAGAAGTCCGGGTGCCATGTTTACACTTGTGGCGATTTCGAGGAATCTGACGAGCAA TTCAGGTCGAGGCCGAGAGGTGGGATGAAGAGGACGTGTCCGAGTGTGGAGACGTTGTTAACTCGAAAGAGAGTTACTACACCACATGAAGTGGAGAACT GTCTCTAG
AA sequence Show only first row Show all	>Lus10037673 pacid=23167323 polypeptide=Lus10037673 locus=Lus10037673.g ID=Lus10037673.BGIv1.0 annot-version=v1.0 MEKEMEEAQDSTYTTTSDIRRYLCKYCGISRSKKYLISSHILSHHKDEMSDEEEEAEEGTKSNTCEECGACFRKPAYLREHIRSHSLERPFKCTVEGCHA SYRRKDHLNRHLLQHKEKLFKCPVESCTREFVLESDVEGHVRDKHCKSAGADGLKQYVCEEPGLKLDSIEAVCLEPGCGKNFSNEQCLKAHIQASHQHIN CEICGSKHLKKNIKRHLRSHEAVSESTQRVSCGHDGCGLTFSSKTNLNKHVKAVHLEAKPFACGFPPCGMRFSYKHVRDNHEKSGCHVYTCGDFEESDEQ FRSRPRGGMKRTCPSVETLLTRKRVTTPHEVENCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10037673 [exp]	0	1
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10036022 [exp]	2.4	0.8751
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10025604 [exp]	3.5	0.8668
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10040571 [exp]	4.6	0.8693
AT3G29270			RING/U-box superfamily protein...		Lus10003473 [exp]	5.2	0.8561
AT5G55760		SRT1	sirtuin 1 (.1)		Lus10016619 [exp]	6.7	0.8639
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10035357 [exp]	6.8	0.8710
AT2G46910			Plastid-lipid associated prote...		Lus10010277 [exp]	11.4	0.8446
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	12.6	0.8553
AT1G73350			unknown protein		Lus10042294 [exp]	13.5	0.8615
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10031572 [exp]	13.7	0.8028

Compare expression of checked genes

Lus10037673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.