Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015658 [exp] 92 / 2e-25 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065900 [exp] 116 / 1e-34 ND / Potri.001G168400 [exp] 103 / 3e-29 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037674 pacid=23167253 polypeptide=Lus10037674 locus=Lus10037674.g ID=Lus10037674.BGIv1.0 annot-version=v1.0 ATGGCTACCCAATGTTCTTACAATGCTAGCCGAAACCCTCCATCGTCGTCTCAAAGAGGAGTAGCCATGGTGTTGGCTCTGGTTTCTGCGGTTGTTCTAT CTCCGTTGTACGCTAGTCAGAGGGACGATCATCATCCGTCGTGGTTTTATCATTACGAGACCAGTTGGAGCTCTGTTTTGGTTCTGCCGATGGTTCTGGC CGGGTTGATAATCGCAATCAAGTCGACATCATCGTCTTCATCAAAGCACGAAGGTGGGATGTACTCGAGGTCGTTGGTTCCATCGGATCCCTCGTGGATG CTTAGAATCGGAAGCTCGTCTTGGGGGCTTGCCGGGATATTGGTCATGCTCGTGCTTGTGTTGTCGTGGCAAGATTCTGTTCAACATTTCTTTTGGAAAT AG
AA sequence Show only first row Show all	>Lus10037674 pacid=23167253 polypeptide=Lus10037674 locus=Lus10037674.g ID=Lus10037674.BGIv1.0 annot-version=v1.0 MATQCSYNASRNPPSSSQRGVAMVLALVSAVVLSPLYASQRDDHHPSWFYHYETSWSSVLVLPMVLAGLIIAIKSTSSSSSKHEGGMYSRSLVPSDPSWM LRIGSSSWGLAGILVMLVLVLSWQDSVQHFFWK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037674 [exp]	0	1
AT5G08350			GRAM domain-containing protein...		Lus10010167 [exp]	6.2	0.7657
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031729 [exp]	7.2	0.7238
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10021828 [exp]	10.9	0.7488
AT2G32280			Protein of unknown function (D...		Lus10038567 [exp]	11.0	0.7279
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10001548 [exp]	11.1	0.7559
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10039565 [exp]	12.7	0.7746
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10007726 [exp]	16.4	0.6997
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10006738 [exp]	19.6	0.7241
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10020086 [exp]	50.7	0.7349
AT1G02810			Plant invertase/pectin methyle...		Lus10029866 [exp]	62.8	0.6935

Compare expression of checked genes

Lus10037674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.