Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17450 1311 / 0 B-block binding subunit of TFIIIC (.1.2) AT1G59453 1195 / 0 B-block binding subunit of TFIIIC (.1) AT1G59077 438 / 4e-135 unknown protein AT1G58766 438 / 4e-135 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015661 [exp] 1482 / 0 AT1G17450 598 / 0.0 B-block binding subunit of TFIIIC (.1.2) Lus10015660 [exp] 541 / 3e-178 AT1G17450 205 / 7e-60 B-block binding subunit of TFIIIC (.1.2) Lus10000374 [exp] 490 / 6e-158 AT1G17450 334 / 2e-103 B-block binding subunit of TFIIIC (.1.2) Lus10000369 [exp] 479 / 1e-152 AT1G17450 294 / 2e-88 B-block binding subunit of TFIIIC (.1.2) Lus10022089 [exp] 320 / 4e-98 AT1G59077 210 / 1e-62 unknown protein Lus10022088 [exp] 280 / 7e-86 AT1G17450 205 / 6e-61 B-block binding subunit of TFIIIC (.1.2) Lus10000409 [exp] 168 / 9e-47 ND / Lus10000370 [exp] 138 / 2e-37 AT1G59453 64 / 1e-12 B-block binding subunit of TFIIIC (.1) Lus10006533 [exp] 125 / 2e-37 AT1G17450 101 / 1e-23 B-block binding subunit of TFIIIC (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G064000 [exp] 1564 / 0 AT1G17450 1446 / 0.0 B-block binding subunit of TFIIIC (.1.2) Potri.001G170001 [exp] 0 / 1 AT1G17450 75 / 2e-16 B-block binding subunit of TFIIIC (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04182 [flax] [poplar] B-block_TFIIIC B-block binding subunit of TFIIIC
Representative CDS sequence Show only first row Show all	>Lus10037675 pacid=23167131 polypeptide=Lus10037675 locus=Lus10037675.g ID=Lus10037675.BGIv1.0 annot-version=v1.0 ATGGGCCTTAGACCGTTGGCCAACCTGTTCAGGCCCAATAATTTGAAAATCCCTGGTCCGGTCCGGATACGGTCCCGACTTTCCCGGAGCTCCAAATATC CCTTACTCTCCGTCTCTCTCCTCCATCTTCTCCCGCCACTATATCAGTTTTCCGGTTTCCTCGGAAGAAGCACTCTCTCCCTCAGTATTTTATTTGCTCG CTGCCGTCCTAACCAATTTAACCAACCACTCTCTCCTGACTCCTCCTCCGCTTCAAATCTCTATCCACCGCATGCGGCGGTTTCCATGGACGCTCTAATC TCGTCAGCACTCGAAGAAGTTTGCTACCGAGGCACCGCCGGCGTCTTACTCTCTTCCCTATGGAGCAAATTAACTCCGCCGCCGTCTCCCGCCGTGAAAG CCAGTCTGTGGAGCAACCTCGTCTCGATTCCCACCGTTCAGTTCGTTGTCCAAGGGGAAGAAGCTGCTGCTCCGCTCTCCCCCCAGGACAGGAGGATCCA ACGCGTCGAGGATGCCGAGAAGTTGAAAGTGAAGATTGTGGCTAAGGAGCAGCTTAGGGATTCGTTTGTTGGACTCTACGATGTCCCTTCCACTGGATTC AAACCTCTTCAGCGTCAAGCTCTTGAGCGGCTTGCCATTGCTAGAGAAGACGGCATTACGCAGATGGAACTCGCCAAAGAGTTTGGAATGGAAGGGAGGA ACTTCTTTTACATAGTGAAGAACCTCGAGAGTCGAAATTTGATCGTGAGGCAGCCGGCAACTGTAAGAACAATGGAAGCTGGCGGTGCCGGAGAAACGAA AAGTTGTGTCCGTACCAATTTGATGTTCTTGTCTCGTTACGCGACGCGTTTAGACGTTCAGCAGATACTTGAAATCAATAAAGAAGAACAAGATCTTGTA AGTCCGGACGAGCTTCGAGAAGCTGATGTAGATGAAGAGGAAAGTTCCGCTGGTGATCGTTTGAAGGATGATGTGCTTGTAAAAGACTACTTACCTGCAA TGCAAGCCATTTGTGATAAACTTGAAGGTGCCAATGGAAATGTACTTGTTGTCTCAGATATTAAGAAGGAGCTGGGTTATAGTGGATATCATGGGCACAA AGCTTGGAGACTTATATTTCAAAAACTGAAGGAAGCTGCTCTGGTTGAGGGGTTTGATGCTAAAGTAAATGAAAAGGTTGAGCATTGCATACGTCTGTTG AAAAAGTTCTCCCCTGATGTTTGCGAGACCAAACTATCTAGAGGTAGTAGTGCATGCGACCGAAATAAACAGCTGAAGTTTGGACGGAGGCCTAAAAGAA ATGAACAACTTCTAGAACTTCCGATTGACCACCAAATATTTGATGTTATCGCTACGAAAGGCACTAAAGGAGCTACAGGCATAGAGGTGTGCTCGAGACT TGGCCTTGAGAAGAAAAAGACCTATGAGAGGTTTAATGATCTGATCTCTAGGTTTGGGATGCGTTGTCAAGCAGAAAGCCACAAAAAAACTGCTATATAT AGGTATTGGACTCCTGCCAGTTATAACTCCCAAGCATCAAACCCTCGTGTGGGTAAATTAGAAACTTCTGCCGGACTTGGTGCTTCAGCATTTGCCCCCG TCCATACTGATGTGCCTAAAAAATCCACTGAATTTTCTTCAATGAATAATCATTTGATTTCTGGAGTTGATTCCACCGATAAGAGACATGTAAGTGACGG AGGAATGGGTACAGAGACTTTAAAAGGAGCAGCATCATGTTCTAAGTTCATTGAAAATGGTAGAGCCAACTCTGGCCAAGTGCTAGACATTGACCATATG TCCAAAGGAGCAACATCTAGCGCAGGACCTGATGTCAGATCAAATGGTACTTCATCAGAAACATCCCAGATAACTCTGCTGAAGCAACCTTCTTCACACC AAATACCTCTAACTGCTGATACTGCACTGCGGGAGAAGAGGATACTTGAACGCTTACAGGAAGAGAAAATTCTCCTCAGAGTTGTGCTGCACAAATGGCT TATCAGTCTTGAGAAGGACAAGGGTATTACAATGGGCCGGAGGACTATTGATCGTATTCTGAACAAGCTCCAAGAAGAAGGGCACTGTAGGTGTGTGACC TTTTATGTCCCTTCCGTTACGAACTGTGGGCGTAGCCGTATGGCTCATGTCATTCTGCATCCGTCCATTGATAGTGTCCTTCCTGAGCAAGTTTATGATA AACTGCGGGAATTTGAGAAGCAGTCTCGTCAAGCATCATCCAGATGCAATGCTAAGGATTCCATTCCTGTATTAAGTGATGTCATAAGAACTCAGGTCCC TGTAGATTTAGATGACCAAACTGCTAAATCAGAAACAATACGGTTCAACGGGTTTGTGTTGGCAAAAATGGTTCGTGCTAAGCTTTTGTACAATGTCTTG TGGGAATTTTTGAGAACTTTAGATGGATGGGACGATACTCTATTGTCTAGTTTGAAGGTTTTTTCACTACAAGCAGCCGTCAAGACCATTCCACTTGAGG TGTTTTTGCAAGTTGCAGGTTCTACTCAAAAGGTTGATAACTTGGTTGAGAAGTGCAAGTTAGGTTTGCGTCTCAGTGATCTTCCTGTAGAAGAATACAA GTCCTTGGTGGATACTCTAGCAAGTAGTAGGCTTTCAAAGATCGTTGACATATTGAGGCGATTGAAGCTCATTCGACTGATACCTGTCGCACATTCAGAG GATGGATTAATGCTTCCACATGCAATGTTTATTGATGCAATGGAACTTAAACCTTACATAGAAGAACCACCATCAATAGTAGCAAAAACTGATGATCTTC GTCCAAGATATCGACATGATTTTTTCCTCTCAAGTAAAGAAGCTGTTGATGACTATTGGAATACGTTGGAGTTTTGCTATGCTGCTGCTGACCCAAAAGC TGCTTCTCTTGCATTCCCTGGATCTGCTGTACCTGAGGTTTTCTCTCAGCCTGCATGGAAATCTGCACGGGTAATGTCTGCTGAAAAGCGCACAGAGCTG TTAAAGCGAATAGCAAATGAAAGTGCGAATAAAAGACTAAGTTATAAAGAGTGTGAAAAGATTGCGATGGATCTGAAGCTGACCTTACAGCAGGTGCTTC ATTTCTATTATAACAAGCGTTACAGATATCCGGATACATCTGTGAATACCAACATAGAGGATCCTCAACCAGCAGATAGATCGAGACGTGCTTCATCTAG AAAACGAAAAAAATCATCACAGAATAATTCACAAAAGGACCATATCGTAGACGATGAGTTGGCTGAACCTGAGGTTGCTGAACTATCTGATGGTGCTGGC CGAGACATGAAAAGGCAATGTCCTTTGTTCCCAGGAGAGGATGATCACAATTTTCCAGTAGATCGAGAACAGTGCCCTGAAGAAACTGTCATCAATTCAC TTCATGCGGATAGCAATCAATTGAGCCAGTATGCACTTTCCAAGATAAAGTCAAGGCGTGAAAAGAGGTTCTTATGGACAGATGATGCTGATAGGCTGTT GATTACCCAATATGCTAGACAACGTGCTATTCTTGGGGTGAGGTTCCATCGTGTTGATTGGAATCAAGTTTCTTGCCTACCTGGACCTCCTAGAACTTGT GCAAGAAGAATAACGACGCTCAAAAGAGATAAGACTTTAAGAAAAGCTTTGATGCGGCTGTGTAACATACTTAGTGAACGTTATGTGAAGTATCTAGAGA AAAGCCAGAGCACGCGTGAGAGTAATAATTTGACCAGAGTTCTTCATCCTTGCTCAACAGCGGGAGATTCTGCTGGGCAGGCTCCTGGTATCAACTACAC TGATGAAGCAGGTTCCGAGGAAGATCAGTGGGATGATTTCAATGAGAGAAGTATTAAGGAAGCATTTGATGAAATTATTCTATACAAGCAAGTGAATCGG AAAGGTGGGAAGGCTGCTGATGAATGGTCCAATCTACAAGGAGACGTTGATGGATATAACGTTCAAGAATTTGGATCGTATTCACCTAGTGACAATGTTC AGGTTGGGCATGATAAACGCAAGGAGTCCAGAAAAAAAATAAAACACCATAAACTTCATGAGAAATTTATGAAGTGTTTAAGTGAAAGCTCAGATGCTGG TAGACAACTGTATAAATCTGTTGCTGTTTCCAATGCCGTGGAGTTGCTAAAGCTTGTTTTCTTGAGTTCCTCAACAACACCAGAGCTCCAGAACATGTTG GGAGAAACCTTAAGGCATTATTCCGAACATGATGTTTTTGCTGCCTTCAGCTATCTCAGGGAGAACAAAATATTGATTGGGAGCAGTGGTGGTCCTTTTG TTCTGTCTCAACAGTTTTTGCACAACATTTCTAGATCTCATTTTCCCACCAATACTGGAAAAAGAGCAGCTAGATTTTCTAATTGGCTTCATAAAGGAAA TAACTTCGGTGCAGGAGGTAGCATTGATTTGAAAGAAGATCTGCATTGTGGGGACATTTTTCAGCTGTTTGCTCTAGTTTCTTCAGGTGAAATGTCACTG TCTCTATGCTTGCCCGGTGAGGGTCTAGGAATGGCTGATGACCAGAGAAGCTCAAAAAGGAAACCTGAGGATGACGGACTTTGTGACAGGGGCAAGGCTA AGAAATTAAAACCAATTGCAGACAGTGAAACCTGTTCTCGACGGGAAAAAGGCTTCCCTGGCATAAGAGTGTCAATCTGCTGTGCAACAATCTTGCCGGT CAATGCTCTTGATTCTCTCAATGATGGTGAAAATGGTATTGATATATCTCAGAAGGATAAAATAGACAATCGTTTTCCCGATTTTGACAGCATTACTCCT TCAGCAAGAATATCGAGTCAATCCTCCTGGGAAACCATGGCAGACTATGCGAACTATCTCCATGAAAATGCTTCTGACCTAACAGAAGGAAGTTCCTTCA GTTCCGAGGTCTTCAGGGCTACTTACACGGCAATTCATAAAGCTGGTGATCAAGGTTTAGGCATTGAGGAGGTTTCAGACACTCTAGCTATGGCAGGAGA AAATATGGGTGAATTTGTCGTTGACGTGCTCCAGACGTTTGGAAGAGTATTGAAGGTCAATGCTTATGACTCAGTTCATGTCGTCGATGCTTTATATCGT TCCAAGTACACTTTGACCTTAAAGACTACTTTGGATGGTGATCCTAAACCACCTACGGTGATAGAGCCATCAGAGACAAGTGAAGATGGCTTCCGTGTGT TCCAGCCCCAAAATAATGATGTGAATGATCCTAGACCCTTGCCTGACAAAGATGTCCACAAAGTTACCATTCTTAATCTCCCAGATGAAGTTGCAATCTC GATGGAACCGCAAACTAGCAATTCACAAGAAACTAATCTGGAAGACCAAGAGATAGTAGACTTTCCTGAACACCATACTGATGGTAAAACTTATATTCCA ATATTCCCATGGATCAATGGAGATGGCACGACAAACAAAGCGGTCTACAGAGGACTTCTCCGACGTGCTCTTGGAACTGTGATGCAAAATCCTGGCATAC TGGAGGAGGATATTATTAAACGCATGGATGTTCTCAATCCGCAGAGTTGCAAAAAGCTGTTGGAGTTAATGATCTTGGATAGTCACCTCATTGTAAGAAA GATGAATCAGCAGTCAGCAAATGCGCCTCCCTCCCTGTTGGGAAGCCTGCTTCGGAACAGCTTCAGCATGCCGAAATCGCCTTGCTGCAGCCTTTTCCTT CCTAACCAAAAATGGATTATGCCATCTCCGAAACGGTCTCAACAAGTTGGTGTCTATAGCCCTACTCTGAGATGTTCGTCAGGAGAGTCTAGAATTTCCT CCTCCTTGAAGAATGCCCGCCCTAGAGCCGGGCGAAAACTAGTCAGAACGATCAAATGCACATCTGGCGAACAAGGTGTAGCCAAGGTGGTAGTTACGCC AGTTTCCAGTCTGGAAATCCCAAGTCCAAATTTTGGGGAGCGCACTTCTTGCTACCCTTTTGTAGCACCTCTGATCTACTTAAATAATTACATGGACTAA
AA sequence Show only first row Show all	>Lus10037675 pacid=23167131 polypeptide=Lus10037675 locus=Lus10037675.g ID=Lus10037675.BGIv1.0 annot-version=v1.0 MGLRPLANLFRPNNLKIPGPVRIRSRLSRSSKYPLLSVSLLHLLPPLYQFSGFLGRSTLSLSILFARCRPNQFNQPLSPDSSSASNLYPPHAAVSMDALI SSALEEVCYRGTAGVLLSSLWSKLTPPPSPAVKASLWSNLVSIPTVQFVVQGEEAAAPLSPQDRRIQRVEDAEKLKVKIVAKEQLRDSFVGLYDVPSTGF KPLQRQALERLAIAREDGITQMELAKEFGMEGRNFFYIVKNLESRNLIVRQPATVRTMEAGGAGETKSCVRTNLMFLSRYATRLDVQQILEINKEEQDLV SPDELREADVDEEESSAGDRLKDDVLVKDYLPAMQAICDKLEGANGNVLVVSDIKKELGYSGYHGHKAWRLIFQKLKEAALVEGFDAKVNEKVEHCIRLL KKFSPDVCETKLSRGSSACDRNKQLKFGRRPKRNEQLLELPIDHQIFDVIATKGTKGATGIEVCSRLGLEKKKTYERFNDLISRFGMRCQAESHKKTAIY RYWTPASYNSQASNPRVGKLETSAGLGASAFAPVHTDVPKKSTEFSSMNNHLISGVDSTDKRHVSDGGMGTETLKGAASCSKFIENGRANSGQVLDIDHM SKGATSSAGPDVRSNGTSSETSQITLLKQPSSHQIPLTADTALREKRILERLQEEKILLRVVLHKWLISLEKDKGITMGRRTIDRILNKLQEEGHCRCVT FYVPSVTNCGRSRMAHVILHPSIDSVLPEQVYDKLREFEKQSRQASSRCNAKDSIPVLSDVIRTQVPVDLDDQTAKSETIRFNGFVLAKMVRAKLLYNVL WEFLRTLDGWDDTLLSSLKVFSLQAAVKTIPLEVFLQVAGSTQKVDNLVEKCKLGLRLSDLPVEEYKSLVDTLASSRLSKIVDILRRLKLIRLIPVAHSE DGLMLPHAMFIDAMELKPYIEEPPSIVAKTDDLRPRYRHDFFLSSKEAVDDYWNTLEFCYAAADPKAASLAFPGSAVPEVFSQPAWKSARVMSAEKRTEL LKRIANESANKRLSYKECEKIAMDLKLTLQQVLHFYYNKRYRYPDTSVNTNIEDPQPADRSRRASSRKRKKSSQNNSQKDHIVDDELAEPEVAELSDGAG RDMKRQCPLFPGEDDHNFPVDREQCPEETVINSLHADSNQLSQYALSKIKSRREKRFLWTDDADRLLITQYARQRAILGVRFHRVDWNQVSCLPGPPRTC ARRITTLKRDKTLRKALMRLCNILSERYVKYLEKSQSTRESNNLTRVLHPCSTAGDSAGQAPGINYTDEAGSEEDQWDDFNERSIKEAFDEIILYKQVNR KGGKAADEWSNLQGDVDGYNVQEFGSYSPSDNVQVGHDKRKESRKKIKHHKLHEKFMKCLSESSDAGRQLYKSVAVSNAVELLKLVFLSSSTTPELQNML GETLRHYSEHDVFAAFSYLRENKILIGSSGGPFVLSQQFLHNISRSHFPTNTGKRAARFSNWLHKGNNFGAGGSIDLKEDLHCGDIFQLFALVSSGEMSL SLCLPGEGLGMADDQRSSKRKPEDDGLCDRGKAKKLKPIADSETCSRREKGFPGIRVSICCATILPVNALDSLNDGENGIDISQKDKIDNRFPDFDSITP SARISSQSSWETMADYANYLHENASDLTEGSSFSSEVFRATYTAIHKAGDQGLGIEEVSDTLAMAGENMGEFVVDVLQTFGRVLKVNAYDSVHVVDALYR SKYTLTLKTTLDGDPKPPTVIEPSETSEDGFRVFQPQNNDVNDPRPLPDKDVHKVTILNLPDEVAISMEPQTSNSQETNLEDQEIVDFPEHHTDGKTYIP IFPWINGDGTTNKAVYRGLLRRALGTVMQNPGILEEDIIKRMDVLNPQSCKKLLELMILDSHLIVRKMNQQSANAPPSLLGSLLRNSFSMPKSPCCSLFL PNQKWIMPSPKRSQQVGVYSPTLRCSSGESRISSSLKNARPRAGRKLVRTIKCTSGEQGVAKVVVTPVSSLEIPSPNFGERTSCYPFVAPLIYLNNYMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17450			B-block binding subunit of TFI...		Lus10037675 [exp]	0	1
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10020879 [exp]	1.7	0.9124
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	2.4	0.8983
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	5.4	0.8696
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10012535 [exp]	7.7	0.8975
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Lus10033279 [exp]	8.3	0.8740
AT1G17450			B-block binding subunit of TFI...		Lus10015661 [exp]	8.5	0.8630
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10025377 [exp]	8.5	0.8728
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	9.0	0.8874
AT1G42440			unknown protein		Lus10030752 [exp]	11.0	0.8948
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	11.5	0.8796

Compare expression of checked genes

Lus10037675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.