Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72660 705 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G17470 697 / 0 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT4G39520 388 / 7e-134 GTP-binding protein-related (.1) AT5G18570 66 / 2e-11 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT1G07615 59 / 2e-09 GTP-binding protein Obg/CgtA (.1) AT5G66470 51 / 1e-06 RNA binding;GTP binding (.1) AT1G30580 50 / 2e-06 GTP binding (.1) AT1G56050 50 / 2e-06 GTP-binding protein-related (.1) AT1G50920 49 / 5e-06 Nucleolar GTP-binding protein (.1) AT1G30960 45 / 7e-05 GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015662 [exp] 760 / 0 AT1G72660 760 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10005800 [exp] 394 / 5e-136 AT4G39520 682 / 0.0 GTP-binding protein-related (.1) Lus10006801 [exp] 391 / 7e-134 AT4G39520 655 / 0.0 GTP-binding protein-related (.1) Lus10034166 [exp] 65 / 4e-11 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10043418 [exp] 65 / 5e-11 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10024297 [exp] 61 / 1e-09 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10016548 [exp] 55 / 8e-08 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1) Lus10040813 [exp] 52 / 4e-07 AT1G07615 293 / 1e-95 GTP-binding protein Obg/CgtA (.1) Lus10002558 [exp] 51 / 1e-06 AT1G50920 1039 / 0.0 Nucleolar GTP-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G063500 [exp] 719 / 0 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.001G170300 [exp] 718 / 0 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.007G080900 [exp] 395 / 1e-136 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.010G022400 [exp] 65 / 5e-11 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.002G029600 [exp] 61 / 1e-09 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G239600 [exp] 57 / 8e-09 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.011G164000 [exp] 50 / 2e-06 AT1G30580 691 / 0.0 GTP binding (.1) Potri.001G258900 [exp] 49 / 3e-06 AT1G50920 999 / 0.0 Nucleolar GTP-binding protein (.1) Potri.001G465900 [exp] 49 / 3e-06 AT1G30580 681 / 0.0 GTP binding (.1) Potri.009G054000 [exp] 49 / 4e-06 AT1G50920 1048 / 0.0 Nucleolar GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase CL0072 [flax] [poplar] Ubiquitin PF02824 [flax] [poplar] TGS TGS domain
Representative CDS sequence Show only first row Show all	>Lus10037676 pacid=23167143 polypeptide=Lus10037676 locus=Lus10037676.g ID=Lus10037676.BGIv1.0 annot-version=v1.0 ATGGGGATCATCGAGAGGATTAAGGAAATCGAATTCGAGATGGCTCGAACACAGAAGAATAAAGCTACAGAGTATCATCTCGGGCAGCTCAAGGCGAAGA TAGCAAAGCTAAGGACACAGTTGTTGGAGCCTCCCAAAGGTTCCAGTGGAGGTGGAGATGGATTTGAAGTTACGAAATTCGGTCATGGACGAGTTGCACT TATTGGATTTCCAAGTGTGGGAAAGTCGACTCTGTTAACTATGTTAACGGGAACCCATTCGGAAGCTGCGTCTTATGAGTTCACTACACTTACCTGTATT CCTGGCATCATACATTACAACGATACAAAAATTCAGCTGCTCGATCTTCCTGGTATCATTGAAGGTGCTTCAGAGGGAAAAGGACGTGGAAGACAGGTTA TTGCTGTTGCCAAGTCTTCAGACATAGTGTTGATGGTTCTTGATGCTTCCAAAAGTGAGGGTCATCGTCAAATATTGACCAAGGAATTGGAAGCTGTTGG CCTGCGTTTAAACAAGAGACCACCTCAGATTTATTTCAAGAAGAAAAAAACTGGTGGAATCTCTTTCAACAGTACTCTTCCTCTAACTCATGTTGATGAA AAGCTCTGTTATCAGATTCTACACGAGTACAAGATTCACAATGCGGAGCTCCTATTCCGTGAGGACGCCACAGTTGACGATCTTATTGACGTCATCGAGG GTAATCGTAAGTACATGAAGTGTGTATACGTCTATAACAAGATCGATGTTATTGGTATTGATGATGTGGACAAGCTAGCTCGTCAGCCGAACTCTGTAGT CATTAGCTGCAACTTGAGGCTCAACTTCGACAGACTACTCTCCAAGATGTGGGAGCAAATGGGGCTTGTGAGAGTCTACACTAAACCACAAGGACAGCAA CCCGATTTCGGCGATCCAGTGGTTCTATCAGTGGATAGAGGAGGGTGCTCAGTCGAGGACTTCTGCAACCACATCCATAGAAGTTTAGTCAAGGATGTCA AGGACGTGCTGGTATGGGGAATAAGTGCACGACACTACCCGCAACACTGTGGCCTCAGTCATGTGCTCCAAGACGAGGATGTCGTCCAGGTTGTCAAGAA AAAGGAAACGGATGAAGGAGGAAGAGGTAGGTTCAAGTCGCACTCGAATGCTCCTGCCCGAATAGCAGACAGAGAAAAGAAGGCTCCATTGAAGCAGTAA
AA sequence Show only first row Show all	>Lus10037676 pacid=23167143 polypeptide=Lus10037676 locus=Lus10037676.g ID=Lus10037676.BGIv1.0 annot-version=v1.0 MGIIERIKEIEFEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGGGDGFEVTKFGHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCI PGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDE KLCYQILHEYKIHNAELLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLRLNFDRLLSKMWEQMGLVRVYTKPQGQQ PDFGDPVVLSVDRGGCSVEDFCNHIHRSLVKDVKDVLVWGISARHYPQHCGLSHVLQDEDVVQVVKKKETDEGGRGRFKSHSNAPARIADREKKAPLKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72660			P-loop containing nucleoside t...		Lus10037676 [exp]	0	1
AT5G61970			signal recognition particle-re...		Lus10043202 [exp]	2.8	0.8809
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Lus10020566 [exp]	7.3	0.8948
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Lus10021657 [exp]	7.5	0.8925
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10033083 [exp]	8.1	0.8827
AT3G07860			Ubiquitin-like superfamily pro...		Lus10012567 [exp]	13.6	0.8073
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10000894 [exp]	20.2	0.8644
AT2G44270		ROL5	repressor of lrx1 (.1.2)		Lus10009739 [exp]	31.2	0.8770
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10004552 [exp]	31.8	0.8596
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10014295 [exp]	31.9	0.8237
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10002407 [exp]	32.7	0.8384

Compare expression of checked genes

Lus10037676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.