Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63980 421 / 4e-148 SUPO1, RON1, ALX8, HOS2, FRY1, ATSAL1, SAL1 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) AT5G64000 326 / 1e-111 ATSAL2, SAL2 Inositol monophosphatase family protein (.1) AT5G09290 326 / 1e-111 Inositol monophosphatase family protein (.1) AT5G63990 320 / 4e-109 Inositol monophosphatase family protein (.1.2) AT5G54390 206 / 2e-64 ATAHL, AHL HAL2-like (.1) AT4G05090 110 / 9e-28 Inositol monophosphatase family protein (.1) AT1G31190 54 / 4e-08 IMPL1 myo-inositol monophosphatase like 1 (.1) AT4G39120 47 / 9e-06 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) AT3G02870 46 / 1e-05 VTC4 Inositol monophosphatase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015663 [exp] 498 / 1e-178 AT5G63980 454 / 2e-159 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10037888 [exp] 218 / 7e-69 AT5G54390 497 / 6e-177 HAL2-like (.1) Lus10038597 [exp] 218 / 8e-69 AT5G54390 505 / 2e-180 HAL2-like (.1) Lus10018453 [exp] 192 / 8e-58 AT5G54390 442 / 2e-154 HAL2-like (.1) Lus10011231 [exp] 190 / 3e-57 AT5G54390 447 / 4e-156 HAL2-like (.1) Lus10007817 [exp] 118 / 2e-30 AT4G05090 436 / 4e-152 Inositol monophosphatase family protein (.1) Lus10006739 [exp] 117 / 3e-30 AT4G05090 469 / 8e-166 Inositol monophosphatase family protein (.1) Lus10041968 [exp] 48 / 5e-06 AT4G39120 447 / 6e-158 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Lus10017976 [exp] 46 / 2e-05 AT4G39120 429 / 9e-151 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G105100 [exp] 433 / 6e-153 AT5G63980 535 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.005G063900 [exp] 426 / 3e-150 AT5G63980 529 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.011G124700 [exp] 215 / 1e-67 AT5G54390 489 / 4e-174 HAL2-like (.1) Potri.011G044900 [exp] 215 / 7e-67 AT5G54390 502 / 2e-177 HAL2-like (.1) Potri.004G036400 [exp] 211 / 3e-65 AT5G54390 497 / 7e-176 HAL2-like (.1) Potri.004G033200 [exp] 109 / 2e-27 AT4G05090 522 / 0.0 Inositol monophosphatase family protein (.1) Potri.010G156500 [exp] 49 / 1e-06 AT3G02870 421 / 7e-151 Inositol monophosphatase family protein (.1.2.3) Potri.010G156300 [exp] 46 / 1e-05 AT3G02870 438 / 4e-157 Inositol monophosphatase family protein (.1.2.3) Potri.009G120600 [exp] 46 / 1e-05 AT4G39120 466 / 2e-165 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Potri.006G014900 [exp] 44 / 6e-05 AT3G02870 442 / 8e-159 Inositol monophosphatase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00459 [flax] [poplar] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Lus10037677 pacid=23167176 polypeptide=Lus10037677 locus=Lus10037677.g ID=Lus10037677.BGIv1.0 annot-version=v1.0 ATGCAGTCAGATGTTCAATCCAAATCAGATAAAAGCCCTGTTACTGTGGCTGACTATGGATCACAAGCTGTTGTTAGTCTTGTTCTACAGAGGGAGCTCC CGTCTGTTCCGTTCTCGTTAGTCGCTGAGGAGGACTCGGGCGATCTTCGGAATGATAGTGCCCGAGACATCACAGCCCGCATTACGGAACTTGTTAATGA TACCTTACGCACTGACGGCTCTTCTTCAACTCTGTCAGTGGAACAAGTGCTGAAGGCCATCGATTGTGGTATATCTGAAGGAGGCTCTACTGGAAGGCAT TGGGTTTTGGACCCTATTGATGGTACTAAAGGGTTTGTAAGAGGAGAACAGTATGCAATAGCATTGGCTCTGCTGGATGAAGGGAAAGTTGTCTTGGTCG GTGCTGGAACTTATATGCAGTCGTTAGAAGGTGATTCATTAGTGCAAGTGAATGTTACTGCTACTGAGAACCCAGAAGAAGCGTCCTTCTTCGAGTCATA TGCAAAAGCACACTCCTTGCATGGCTTAACCAGCTCTATTGCTGAGAAACTTGGTGTTAAGGCACCACCAGTTAGATTTGATAGCCAGGCGAAATATGGG GCTCTTTCGAGGGGTGATGGAGCCATATACATGCGTTTTCCCCACCAAGGATACCGCGAGAAAATATGGGATCATGCTGCTGGTTGCATTGTCGTGACAG AAGCCGGTGGACTTGTAACTGATGCCGCGGGGAATGAATTGGATTTTTCGAAGGGAAGATACTTGGATGTGGACACAGGGATCATTTCCACTAATCCCAA ATTGATGCCATTGCTCCTCAAGGCCATCAGTGAAGCTAAGGACAGCAGTACTTCTTCCCTCTGA
AA sequence Show only first row Show all	>Lus10037677 pacid=23167176 polypeptide=Lus10037677 locus=Lus10037677.g ID=Lus10037677.BGIv1.0 annot-version=v1.0 MQSDVQSKSDKSPVTVADYGSQAVVSLVLQRELPSVPFSLVAEEDSGDLRNDSARDITARITELVNDTLRTDGSSSTLSVEQVLKAIDCGISEGGSTGRH WVLDPIDGTKGFVRGEQYAIALALLDEGKVVLVGAGTYMQSLEGDSLVQVNVTATENPEEASFFESYAKAHSLHGLTSSIAEKLGVKAPPVRFDSQAKYG ALSRGDGAIYMRFPHQGYREKIWDHAAGCIVVTEAGGLVTDAAGNELDFSKGRYLDVDTGIISTNPKLMPLLLKAISEAKDSSTSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Lus10037677 [exp]	0	1
					Lus10028090 [exp]	2.0	0.8456
AT1G34050			Ankyrin repeat family protein ...		Lus10018757 [exp]	2.6	0.8494
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	9.5	0.8107
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039533 [exp]	13.2	0.7551
					Lus10014515 [exp]	14.3	0.8102
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10014077 [exp]	15.2	0.7877
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10020877 [exp]	15.8	0.8054
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10013251 [exp]	16.2	0.7827
AT3G13400		SKS13	SKU5 similar 13 (.1)		Lus10036492 [exp]	16.4	0.7689
AT1G11070			unknown protein		Lus10038307 [exp]	18.1	0.7914

Compare expression of checked genes

Lus10037677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.