Plant FIBer expression Database

Lus10037680 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20570 112 / 1e-33 HRT1, ROC1, RBX1, ATRBX1 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3)
AT3G42830 103 / 3e-30 RING/U-box superfamily protein (.1)
AT3G05870 35 / 0.0007 APC11 anaphase-promoting complex/cyclosome 11 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015667
[exp]
133 / 5e-42 AT5G20570 200 / 5e-68 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3)
Lus10013153
[exp]
114 / 1e-34 AT5G20570 206 / 2e-70 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3)
Lus10008115
[exp]
113 / 3e-34 AT5G20570 129 / 2e-40 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G141300
[exp]
115 / 5e-35 AT5G20570 209 / 1e-71 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3)
Potri.001G167400
[exp]
112 / 9e-34 AT5G20570 203 / 3e-69 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3)
Potri.003G067100
[exp]
112 / 9e-34 AT5G20570 206 / 2e-70 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3)
PFAM info
Representative CDS sequence
>Lus10037680 pacid=23167014 polypeptide=Lus10037680 locus=Lus10037680.g ID=Lus10037680.BGIv1.0 annot-version=v1.0
ATGGACGTCGACGTTGCTATGGCGCCGGCCGGTGAAGGAAGCTCCAGCGCCCCCGGACCTTCAACCTGCTGCAAGAAGGCCAAGTCCTTCGAGATCAAAA
AGTGGAATGCCGTCTCTCTTTGGGCATGGGATATTGTGGTGGATAACTGCGCAATTTGCAGGAATCATATTATGGATCTTTGCATTGAGTGCCAAGCTAA
TCAAGCGAGTGCCACCAGCGAGGAGTGCACTGTTGCTTGGGGTATGTGA
AA sequence
>Lus10037680 pacid=23167014 polypeptide=Lus10037680 locus=Lus10037680.g ID=Lus10037680.BGIv1.0 annot-version=v1.0
MDVDVAMAPAGEGSSSAPGPSTCCKKAKSFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G20570 HRT1, ROC1, RBX... REGULATOR OF CULLINS-1, RING-b... Lus10037680
[exp]
0 1
AT2G20820 unknown protein Lus10031625
[exp]
3.2 0.9363
AT5G03290 IDH-V isocitrate dehydrogenase V (.1... Lus10026519
[exp]
3.6 0.9414
AT1G20200 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2... Lus10034469
[exp]
7.2 0.9272
AT1G07360 C3HZnF MAC5A MOS4-associated complex subuni... Lus10037244
[exp]
7.5 0.9201
AT1G03280 Transcription factor TFIIE, al... Lus10019269
[exp]
7.6 0.8994
AT1G24265 Protein of unknown function (D... Lus10011347
[exp]
8.9 0.9101
AT1G07360 C3HZnF MAC5A MOS4-associated complex subuni... Lus10035658
[exp]
9.4 0.9157
AT5G01230 S-adenosyl-L-methionine-depend... Lus10017186
[exp]
10.2 0.9233
AT5G51830 pfkB-like carbohydrate kinase ... Lus10027401
[exp]
11.1 0.9274
AT5G13430 Ubiquinol-cytochrome C reducta... Lus10035118
[exp]
12.4 0.9251

Lus10037680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.