Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54115 686 / 0 ATCCX4 cation calcium exchanger 4 (.1) AT3G14070 674 / 0 ATCCX3, CAX9 CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1) AT5G17860 382 / 1e-125 CAX7 calcium exchanger 7 (.1) AT5G17850 335 / 2e-107 Sodium/calcium exchanger family protein (.1) AT1G08960 155 / 2e-40 CCX5, AtCXX5, ATCAX11, CAX11 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037682 [exp] 1179 / 0 AT1G54115 758 / 0.0 cation calcium exchanger 4 (.1) Lus10015668 [exp] 752 / 0 AT1G54115 484 / 8e-168 cation calcium exchanger 4 (.1) Lus10015669 [exp] 399 / 1e-136 AT1G54115 256 / 1e-81 cation calcium exchanger 4 (.1) Lus10013635 [exp] 371 / 4e-121 AT5G17860 540 / 0.0 calcium exchanger 7 (.1) Lus10001330 [exp] 365 / 2e-118 AT5G17860 552 / 0.0 calcium exchanger 7 (.1) Lus10013634 [exp] 313 / 1e-98 AT5G17850 512 / 4e-177 Sodium/calcium exchanger family protein (.1) Lus10001329 [exp] 292 / 4e-90 AT5G17850 505 / 8e-174 Sodium/calcium exchanger family protein (.1) Lus10005673 [exp] 232 / 5e-69 AT5G17850 346 / 7e-114 Sodium/calcium exchanger family protein (.1) Lus10020318 [exp] 234 / 5e-68 AT5G17850 464 / 2e-157 Sodium/calcium exchanger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G066900 [exp] 798 / 0 AT1G54115 802 / 0.0 cation calcium exchanger 4 (.1) Potri.001G167200 [exp] 751 / 0 AT1G54115 811 / 0.0 cation calcium exchanger 4 (.1) Potri.013G065800 [exp] 387 / 5e-127 AT5G17860 420 / 9e-141 calcium exchanger 7 (.1) Potri.019G040200 [exp] 375 / 1e-122 AT5G17860 449 / 2e-152 calcium exchanger 7 (.1) Potri.013G065900 [exp] 367 / 1e-119 AT5G17850 508 / 1e-175 Sodium/calcium exchanger family protein (.1) Potri.019G040301 [exp] 319 / 6e-102 AT5G17850 393 / 2e-131 Sodium/calcium exchanger family protein (.1) Potri.013G025100 [exp] 140 / 2e-35 AT1G08960 603 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10037681 pacid=23167164 polypeptide=Lus10037681 locus=Lus10037681.g ID=Lus10037681.BGIv1.0 annot-version=v1.0 ATGGATGTTCCCAGCTGGTCGAATGGTGGCAGAACCCCTAAATTGAGGGGAGTTTTCAACGGATTGTGTGCGTTGATATTCGTCATCCTGTTGTACGATC GTGGAGGTCTGATCAGGAAAGTTCCTGGATTTGGTGATGGGATGAATGGTGTTGAACATATTCGTAGGCAGATGATTGAAGTTGGTGCGAATTCGTCGAG TTCTGGAAACAATTTGGATATGATGAAGAGGGCGATTCAATGTAGAGAAGTGGTTTTTCATAAGGGATATGCTGATGAATGTGCCTTCTTGAAAGCTAAT CCGCAATGTTTCTCCGACGGAGGCTTCTTCGATTACGTCAATTTCTTGTATTGTGACTTTGGCAACTTCAGATGGTTGGGATTCCTCGTGCTGGGAATCT GGCTTGCTGCTTTGTTTTATTTGTTGGGGAACACGGCTGCAGATTACTTCTGTGGCTCGTTGGAGAAATTGTCGAGTCTTTTGAAGTTGCCCCCGACTGT AGCTGGTGTCGCCCTTCTACCGTTGGGGAATGGGGCGCCAGATGTGTTTGCAAGTATTGCTGCATTTCTCGGAGAGGATTCCGGAGATGTCGGTCTTAAT AGTGTCTTGGGTGGTGCTGTGTTTGTAACCTCTGTTGTTGTCGGTGCTGTTTCGTTGTGTGTGGCGGAGAAGGACATGCAGATCGACCGGAAATGCTTCA TCAGGGATATATGTTTCTTCCTCTTTAGTCTATTTTCCTTGTTGGCGATTTTGATGGTCGGTAAAGTGACCGTGACTGCTGCAATCGCGTTCGTCTTGAT TTACGTGGTGTATGCGTTCTTCGTTGCTGCCAATGAACTTTTGAGGAAACATGCTCAGAGGCTGAAGCTGGATTCCGTTACACCGCTCATGCCGGTTAGA GGAAGTATATTTTCGCAGGGGGATGAAGAAGATGTTACTGTGTACAGTTCTCTGCTCGACATCGAGACTGAGAATGACATGCCTGATCAACAACCACCTT CGCTCCCGTCGTGGATGTGGGCTTCTAATGTGGCGATATACTCGAACCACTCGTCGAAACTGGATGAGGAAAGATCGTCCCTTTGGGGATGGAACGACGA GGGGGGTTCGGAAATGAGGAAATGTTCGTTCTCGTGTTCGAGATTGTTTACCATCATGGAGATTCCGCTAACGATTCCCCGAAGGCTTACGATCCCACTA GTGGACGACGAAACTTGGTCGAAGCCCTATGCAGTTAGCAGTGCTGCATTGGCTCCGGTTCTAATTACATACTTGTGGAGTATGCAAGATGATCTGTCTC CTACGAGCAGAACCGTAGCTTACATTATCGGTCTTGCACTCGGTTTCTCACTCGGTATCCTTGCTTACCAGCATACATTGTCTGATCACCCGCCTCGAAA GTTTATGCTCGCCTGGGTTCTCGGCGGGTTTGTGATGAGCATCACTTGGTTCTACATGATAGCCAACGAGCTCGTTTCGTTACTGGTTGCATTCGGGACA GTGCTGGGAGTTAATCCATCGATTCTGGGACTAACAGTACTGGCATGGGGAAACTCAATGGGGGACCTGGTATCAAACGTTGCCTTGGCTATGAACGGTG GCGATAGCTTGCAGATCGCAATGTCCGGATGCTACGCTGGGCCCATGTTCAATACGCTTATCGGTCTGGGGGCCTCGATGCTGTTAGGTGCATGGTCAAG CAGCAACAGTATGTACGTTATCCCTCGAGACAAGTCGTTGTTCTTGACCATAGCTTTTCTCGTGTCCGGGTTGCTGTGGGCTTTGGTCGTGTTGCCGCTG AACAATATGCGTCCGAACAAGATCCTAGGTTTTGGGCTGATAATTATGTATCTGGTTTTTCTTTCGGTTCGGTTGGCTACTGCCACTGGCTTTTCAGTGA GCTGA
AA sequence Show only first row Show all	>Lus10037681 pacid=23167164 polypeptide=Lus10037681 locus=Lus10037681.g ID=Lus10037681.BGIv1.0 annot-version=v1.0 MDVPSWSNGGRTPKLRGVFNGLCALIFVILLYDRGGLIRKVPGFGDGMNGVEHIRRQMIEVGANSSSSGNNLDMMKRAIQCREVVFHKGYADECAFLKAN PQCFSDGGFFDYVNFLYCDFGNFRWLGFLVLGIWLAALFYLLGNTAADYFCGSLEKLSSLLKLPPTVAGVALLPLGNGAPDVFASIAAFLGEDSGDVGLN SVLGGAVFVTSVVVGAVSLCVAEKDMQIDRKCFIRDICFFLFSLFSLLAILMVGKVTVTAAIAFVLIYVVYAFFVAANELLRKHAQRLKLDSVTPLMPVR GSIFSQGDEEDVTVYSSLLDIETENDMPDQQPPSLPSWMWASNVAIYSNHSSKLDEERSSLWGWNDEGGSEMRKCSFSCSRLFTIMEIPLTIPRRLTIPL VDDETWSKPYAVSSAALAPVLITYLWSMQDDLSPTSRTVAYIIGLALGFSLGILAYQHTLSDHPPRKFMLAWVLGGFVMSITWFYMIANELVSLLVAFGT VLGVNPSILGLTVLAWGNSMGDLVSNVALAMNGGDSLQIAMSGCYAGPMFNTLIGLGASMLLGAWSSSNSMYVIPRDKSLFLTIAFLVSGLLWALVVLPL NNMRPNKILGFGLIIMYLVFLSVRLATATGFSVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037681 [exp]	0	1
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10033702 [exp]	1.0	0.9348
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037682 [exp]	1.4	0.9185
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015669 [exp]	2.8	0.8707
AT1G26800			RING/U-box superfamily protein...		Lus10037170 [exp]	3.7	0.8714
AT1G65720			unknown protein		Lus10010961 [exp]	5.5	0.9067
AT1G01360		PYL9, RCAR1	PYRABACTIN RESISTANCE 1-LIKE 9...		Lus10040916 [exp]	11.0	0.8683
AT3G04350			Plant protein of unknown funct...		Lus10027952 [exp]	11.2	0.8841
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10027290 [exp]	15.1	0.8730
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10033934 [exp]	15.9	0.8547
AT3G19950			RING/U-box superfamily protein...		Lus10010179 [exp]	16.5	0.7876

Compare expression of checked genes

Lus10037681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.