Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT1G54115	638 / 0	ATCCX4	cation calcium exchanger 4 (.1)
AT3G14070	637 / 0	ATCCX3, CAX9	CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1)
AT5G17860	344 / 4e-103	CAX7	calcium exchanger 7 (.1)
AT5G17850	294 / 6e-86		Sodium/calcium exchanger family protein (.1)
AT1G08960	110 / 2e-24	CCX5, AtCXX5, ATCAX11, CAX11	cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10037681 [exp]	1116 / 0	AT1G54115	763 / 0.0	cation calcium exchanger 4 (.1)
Lus10015668 [exp]	685 / 0	AT1G54115	484 / 8e-168	cation calcium exchanger 4 (.1)
Lus10015669 [exp]	398 / 1e-126	AT1G54115	256 / 1e-81	cation calcium exchanger 4 (.1)
Lus10013635 [exp]	335 / 3e-100	AT5G17860	540 / 0.0	calcium exchanger 7 (.1)
Lus10001330 [exp]	330 / 4e-98	AT5G17860	552 / 0.0	calcium exchanger 7 (.1)
Lus10013634 [exp]	280 / 7e-81	AT5G17850	512 / 4e-177	Sodium/calcium exchanger family protein (.1)
Lus10001329 [exp]	258 / 5e-73	AT5G17850	505 / 8e-174	Sodium/calcium exchanger family protein (.1)
Lus10005673 [exp]	197 / 8e-54	AT5G17850	346 / 7e-114	Sodium/calcium exchanger family protein (.1)
Lus10020318 [exp]	199 / 5e-53	AT5G17850	464 / 2e-157	Sodium/calcium exchanger family protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.003G066900 [exp]	763 / 0	AT1G54115	802 / 0.0	cation calcium exchanger 4 (.1)
Potri.001G167200 [exp]	722 / 0	AT1G54115	811 / 0.0	cation calcium exchanger 4 (.1)
Potri.013G065800 [exp]	368 / 2e-111	AT5G17860	420 / 9e-141	calcium exchanger 7 (.1)
Potri.019G040200 [exp]	356 / 5e-107	AT5G17860	449 / 2e-152	calcium exchanger 7 (.1)
Potri.013G065900 [exp]	332 / 9e-99	AT5G17850	508 / 1e-175	Sodium/calcium exchanger family protein (.1)
Potri.019G040301 [exp]	279 / 2e-81	AT5G17850	393 / 2e-131	Sodium/calcium exchanger family protein (.1)
Potri.013G025100 [exp]	123 / 2e-28	AT1G08960	603 / 0.0	cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF01699 [flax] [poplar]	Na_Ca_ex	Sodium/calcium exchanger protein

Representative CDS sequence

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>Lus10037682 pacid=23167205 polypeptide=Lus10037682 locus=Lus10037682.g ID=Lus10037682.BGIv1.0 annot-version=v1.0

ATGGATGTTCCCAGCTGGTCGAATGGTGGCAGAACCCCTAAATTGAGGGGAGTTTTCAACGGATTGTGTGCGTTGATATTCGTCATCCTGTTGTACGATC

GTGGAGGTCTGATCAGGAAAGTTCCTGGATTTGGTGATGGGATGAATGGTGTTGAACATATTCGTAGGCAGATGATTGAAGTTGGTGCGAATTCGTCGAG

TTCTGGAAACAATTTGGATATGATGAAGAGGGCGATTCAATGTAGAGAAGTGGTTTTTCATAAGGGATATGCTGATGAATGTGCCTTCTTGAAAGCTAAT

CCGCAATGTTTCTCCGACGGAGGCTTCTTCGATTACGTCAATTTCTTGTATTGTGACTTTGGCAACTTCAGATGGTTGGGATTCCTCGTGCTGGGAATCT

GGCTTGCTGCTTTGTTTTATTTGTTGGGGAACACGGCTGCAGATTACTTCTGTGGCTCGTTGGAGAAATTGTCGAGTCTTTTGAAGTTGCCCCCGACTGT

AGCTGGTGTCGCCCTTCTACCGTTGGGGAACGGGGCACCCGATGTGTTTGCAAGTATCGCTGCATTTCTTGGAGAGGATTCTGGAGATGTCGGTCTTAAT

AGTGTGTTGGGTGGTGCTGTGTTTGTAACCTCTGTTGTTGTCGGTGCTGTTTCGTTGTGTGTGGCGGAGAAGGACATGCAGATCGACCGGAAATGCTTCA

TCAGGGATATATGTTTCTTCCTCTTTAGTCTATTTTCCTTGTTGGCGATTTTGATGGTCGGTAAAGTGACCGTGACTGCTGCAATCGCGTTCGTACTGAT

TTATGTGGTGTATGCGTTCTTCGTTGCTGCCAATGAACTTTTGAGGAAACATGCTCAGAGGCTGAAGCTGGATTCCGTTACACCGCTCATGCCGGTTAGA

GGAAGTATATTTTCGCAGGGGAATGAAGAAGATGTTACTGTGTACAGTTCTCTGCTCGACGTCGAGACTGAGAATGACATGCCTGATCAACAACCACCTT

CGCTCCCGTCGTGGATGTGGGCTTCTAATGTGGCGATATACTCGAACCACTCGTCGAAACTGGATGAGGAAAGATCGTCCCTTTGGGGATGGAACGACGA

GGGGGGTTCGGAAATGAGGAAATGTTCGTTCTCGTGTTCGAGATTGTTTACCATCATGGAGATTCCGCTAACGATTCCCCGAAGGCTTACGATCCCACTA

GTGGACGACGAAACTTGGTCGAAGCCCTATGCAGTTAGCAGTGCTGCATTGGCTCCCGTTCTGGTTTCGTATCTTTGGAGTATGCAAGATGATCTGTCTC

CCACGAGCAAAACCGTAGCTTACATTATTGGTCTTGGACTCGGTTTCTCACTCGGTATCCTTGCTTACCAGCATACATTGTCTGATCACCCGCCTCGAAA

GTTTATGCTCGCCTGGGTTCTCGGCGGGTTTGTGATGAGCATCACTTGGTTCTACATGATAGCCAACGAGCTCGTTTCGTTACTGGTTGCATTCGGGACA

GTGCTGGGAGTTAATCCATCGATTCTGGGACTAACAGTACTGGCATGGGGAAACTCAATGGGGGACCTGGTATCAAACGTTGCCTTGGCTATGAACGGTG

GCGATAGCTTGCAGATCGCAATGTCCGGATGCTACGCTGGGCCCATGTTCAATACGCTTATCGGTCTGGGGGCCTCGATGCTGTTAGGTGCATGGTCAAG

CAGCAACAGTATGTACGTTATCCCTCGAGACAAGTCGTTGTTCTTGACCATAGCTTTTCTCGTGTCCGGGTTGCTGTGGGCTTTGGTCGTGTTGCCGCTG

AACAATATGCGTCCGAACAAGATCCTAGGTTTTGGGCTGATAATTATGTATCTGGTTTTTCTTTCGGTTCGGTTGGCTACTGCCACCGGCNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGGGG

GGAAAGAGTAA

AA sequence

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>Lus10037682 pacid=23167205 polypeptide=Lus10037682 locus=Lus10037682.g ID=Lus10037682.BGIv1.0 annot-version=v1.0

MDVPSWSNGGRTPKLRGVFNGLCALIFVILLYDRGGLIRKVPGFGDGMNGVEHIRRQMIEVGANSSSSGNNLDMMKRAIQCREVVFHKGYADECAFLKAN

PQCFSDGGFFDYVNFLYCDFGNFRWLGFLVLGIWLAALFYLLGNTAADYFCGSLEKLSSLLKLPPTVAGVALLPLGNGAPDVFASIAAFLGEDSGDVGLN

SVLGGAVFVTSVVVGAVSLCVAEKDMQIDRKCFIRDICFFLFSLFSLLAILMVGKVTVTAAIAFVLIYVVYAFFVAANELLRKHAQRLKLDSVTPLMPVR

GSIFSQGNEEDVTVYSSLLDVETENDMPDQQPPSLPSWMWASNVAIYSNHSSKLDEERSSLWGWNDEGGSEMRKCSFSCSRLFTIMEIPLTIPRRLTIPL

VDDETWSKPYAVSSAALAPVLVSYLWSMQDDLSPTSKTVAYIIGLGLGFSLGILAYQHTLSDHPPRKFMLAWVLGGFVMSITWFYMIANELVSLLVAFGT

VLGVNPSILGLTVLAWGNSMGDLVSNVALAMNGGDSLQIAMSGCYAGPMFNTLIGLGASMLLGAWSSSNSMYVIPRDKSLFLTIAFLVSGLLWALVVLPL

NNMRPNKILGFGLIIMYLVFLSVRLATATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGKE

DESeq2's median of ratios [FLAX]

Coexpressed genes

Only top 10 genes are shown Show all Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At alias	At description	Locus	MR	r
AT1G54115	ATCCX4	cation calcium exchanger 4 (.1...	Lus10037682 [exp]	0	1
AT1G54115	ATCCX4	cation calcium exchanger 4 (.1...	Lus10037681 [exp]	1.4	0.9185
AT4G05460		RNI-like superfamily protein (...	Lus10023277 [exp]	1.7	0.8912
AT2G20780	AtPLT4	Major facilitator superfamily ...	Lus10033702 [exp]	4.2	0.9017
AT3G22530		unknown protein	Lus10004901 [exp]	6.3	0.8739
AT3G02720		Class I glutamine amidotransfe...	Lus10031360 [exp]	6.8	0.8423
AT1G54115	ATCCX4	cation calcium exchanger 4 (.1...	Lus10015669 [exp]	9.3	0.8365
AT3G04350		Plant protein of unknown funct...	Lus10027952 [exp]	9.6	0.8849
AT4G02500	ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...	Lus10037520 [exp]	11.0	0.8658
AT1G56110	NOP56	homolog of nucleolar protein N...	Lus10040032 [exp]	12.0	0.8627
AT1G19910	AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...	Lus10028370 [exp]	15.5	0.8531

Lus10037682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10037682 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10037682 coexpression network