Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72510 134 / 2e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) AT2G09970 123 / 6e-36 Protein of unknown function (DUF1677) (.1) AT5G20670 108 / 3e-30 Protein of unknown function (DUF1677) (.1) AT3G22540 96 / 1e-25 Protein of unknown function (DUF1677) (.1) AT4G14819 92 / 2e-24 Protein of unknown function (DUF1677) (.1) AT1G79770 88 / 4e-22 Protein of unknown function (DUF1677) (.1) AT1G54095 86 / 2e-21 Protein of unknown function (DUF1677) (.1) AT5G25840 82 / 1e-19 Protein of unknown function (DUF1677) (.1) AT2G25780 71 / 1e-15 Protein of unknown function (DUF1677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015670 [exp] 266 / 2e-92 AT1G72510 139 / 7e-43 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10008118 [exp] 171 / 1e-54 AT1G72510 157 / 1e-49 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10013156 [exp] 162 / 3e-51 AT1G72510 157 / 2e-49 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10000571 [exp] 92 / 3e-23 AT5G25840 174 / 9e-56 Protein of unknown function (DUF1677) (.1) Lus10011427 [exp] 90 / 1e-22 AT5G25840 172 / 5e-55 Protein of unknown function (DUF1677) (.1) Lus10006044 [exp] 89 / 4e-22 AT5G25840 175 / 2e-56 Protein of unknown function (DUF1677) (.1) Lus10037569 [exp] 86 / 2e-21 AT5G25840 173 / 1e-55 Protein of unknown function (DUF1677) (.1) Lus10006107 [exp] 84 / 9e-21 AT3G22540 155 / 2e-50 Protein of unknown function (DUF1677) (.1) Lus10010564 [exp] 82 / 2e-20 AT3G22540 151 / 1e-48 Protein of unknown function (DUF1677) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166900 [exp] 162 / 3e-51 AT1G72510 190 / 2e-62 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.003G067800 [exp] 156 / 6e-49 AT1G72510 194 / 5e-64 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.006G140600 [exp] 112 / 9e-32 AT5G20670 147 / 5e-46 Protein of unknown function (DUF1677) (.1) Potri.006G219100 [exp] 111 / 9e-32 AT1G72510 131 / 7e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.001G188700 [exp] 105 / 8e-29 AT1G79770 157 / 2e-49 Protein of unknown function (DUF1677) (.1) Potri.003G050200 [exp] 99 / 5e-26 AT5G25840 152 / 3e-47 Protein of unknown function (DUF1677) (.1) Potri.006G237300 [exp] 89 / 1e-22 AT2G25780 122 / 6e-36 Protein of unknown function (DUF1677) (.1) Potri.010G086000 [exp] 88 / 1e-22 AT4G14819 136 / 3e-43 Protein of unknown function (DUF1677) (.1) Potri.008G154500 [exp] 86 / 5e-22 AT3G22540 133 / 1e-41 Protein of unknown function (DUF1677) (.1) Potri.015G031700 [exp] 81 / 2e-20 AT4G14819 75 / 5e-19 Protein of unknown function (DUF1677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07911 [flax] [poplar] DUF1677 Protein of unknown function (DUF1677)
Representative CDS sequence Show only first row Show all	>Lus10037683 pacid=23167308 polypeptide=Lus10037683 locus=Lus10037683.g ID=Lus10037683.BGIv1.0 annot-version=v1.0 ATGGTGTATTTGATGATTCCGTTTGCAGAAGAAGATATAGCTGAAGAAGTGAAAACAGGGGTGTTTTGGTCATTTGGCCTGCTGCCGGCGGCATATTCCG ATCACCGGGAGGACACAAAGATGTCAACAACCATCCTAAGTGACACACTAGTGGTGGAATCCCAGCCGGCACCGGCAGAGGTGGAATCGGCAAAGTGCGA TTGTTGCGGATTGACGGAGGAATGTACGACGGAGTACATAGAGAAGGTGAAGGAGAGGTACAATGGGAGATGGGTATGCGGACTGTGCAGCGAAGCAGTG AAAACAGATCAGGAAAGACTTATAGTAACCAGAGAGGAAGCTTTGACTAACCACATTAACTTCTGCAAGAAGTTTGCGGCTTCGCCATCGGAGACCGATG ATCCTGCCCTGCATTTGATCTCCGCGATGAGGCAAATCCTTCTAAGAAGCTTGGACTCGCCTCCTCGAGGTGGGATGAGGTCAACTCCCGGTAGCCCCAC GACAAAGTCTGTAGGGAAGCTCTCCAGGTCAGGGAGTTGTTTCTCTACCTTATCCCGCTAA
AA sequence Show only first row Show all	>Lus10037683 pacid=23167308 polypeptide=Lus10037683 locus=Lus10037683.g ID=Lus10037683.BGIv1.0 annot-version=v1.0 MVYLMIPFAEEDIAEEVKTGVFWSFGLLPAAYSDHREDTKMSTTILSDTLVVESQPAPAEVESAKCDCCGLTEECTTEYIEKVKERYNGRWVCGLCSEAV KTDQERLIVTREEALTNHINFCKKFAASPSETDDPALHLISAMRQILLRSLDSPPRGGMRSTPGSPTTKSVGKLSRSGSCFSTLSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72510			Protein of unknown function (D...		Lus10037683 [exp]	0	1
AT2G36410			Family of unknown function (DU...		Lus10035563 [exp]	1.0	0.9042
AT4G07390			Mannose-P-dolichol utilization...		Lus10021350 [exp]	2.4	0.8868
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10010433 [exp]	2.8	0.8728
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10032963 [exp]	4.5	0.8786
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	5.7	0.8933
AT4G30830			Protein of unknown function, D...		Lus10036599 [exp]	8.4	0.8692
AT2G25070			Protein phosphatase 2C family ...		Lus10026253 [exp]	9.5	0.8617
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10022524 [exp]	9.9	0.8651
AT4G37030			unknown protein		Lus10011021 [exp]	10.4	0.8762
AT3G13880			Tetratricopeptide repeat (TPR)...		Lus10014009 [exp]	12.2	0.8024

Compare expression of checked genes

Lus10037683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.