Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14120 1532 / 0 unknown protein AT4G28450 187 / 6e-51 nucleotide binding;protein binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015675 [exp] 2025 / 0 AT3G14120 1529 / 0.0 unknown protein Lus10037378 [exp] 214 / 4e-60 AT4G28450 733 / 0.0 nucleotide binding;protein binding (.1) Lus10015673 [exp] 124 / 4e-31 AT4G28450 221 / 3e-69 nucleotide binding;protein binding (.1) Lus10024447 [exp] 47 / 0.0001 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10007449 [exp] 45 / 0.0005 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10017570 [exp] 44 / 0.0005 AT1G18080 561 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G165900 [exp] 1672 / 0 AT3G14120 1571 / 0.0 unknown protein Potri.017G014700 [exp] 202 / 5e-56 AT4G28450 798 / 0.0 nucleotide binding;protein binding (.1) Potri.007G137300 [exp] 201 / 1e-55 AT4G28450 794 / 0.0 nucleotide binding;protein binding (.1) Potri.018G020200 [exp] 45 / 0.0005 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF04121 [flax] [poplar] Nup84_Nup100 Nuclear pore protein 84 / 107
Representative CDS sequence Show only first row Show all	>Lus10037684 pacid=23167194 polypeptide=Lus10037684 locus=Lus10037684.g ID=Lus10037684.BGIv1.0 annot-version=v1.0 ATGGACATGGAAATGGAGGCTTCTCCTGCCTACTTCCGCCCCGAAGATCTCACCATCAGAGAACAGTATCGCCGATACGGCACTTGGTGGTTGTCTAAGT ATGGATGCATATCGTTGTGCAGTAAACGACACTCGATTTCGAGCTCGTCGCCAGGTCAAGAGAGTACGAGCTCGAGGTTCAAGGATTCTAGGCTACTGTA TGATGGGCAAAGCATACACAGTCCCACGAATGCTGCACTCCTTCTCGAGCATATCAAGCAGGAGGCTGATGGTATGGACTCCGATCACTACGATGCCATG CCTGCAAGGGTGCAAGCTTCTGCGAAAAGGAGGTCAGCAATTGAAGGGTTTTCAGAGGCTGATCTCCTAGTCGATCCAGAGCTTCAAACTGGGAGCCAAT CGCTTAAAGCGTGCAAGATTGAGGATGAATCGGCAGACAGTGGAGAAGCTGTGTTCGGTCTATTTGCTTCTCTTTTGGATTCTGCTATTCAAGGTTTGAT GCCTATTCCTGATTTGATTTTGAGATTCGAGAGATTATGCCGCAATGTCTCAGAAGATATAAGGTCTCAATCAAACATAAGGCACCGAGTTCTAGAGGAA AAATTAATGAGGCAGAAGGTCCAGCTCCTGCTTGATGAGGCTGCCACCTGGTCACTTCTATGGCACCTGTATGGCAAAGTGACTGAAGAGCACCTTGAAG AACTAATTGTGTCTCCACCTACGTCACATGTTGAAGCTTGTCAGTTCGTGGCAAATGACCACACAGCACAATTGTGCCTCCGTATTGTTCAGTGGCTGGA GGGTTTAGCCTCTAAGTCCCTTGATCTCGAAAGCAAGGTTCAGGAACCTCGAATTGGTACTTATCTTCCAAATTCTGGAATATGGCACAATACACAACGT TTGCTGAAGAAAGGTACATCTGGCAAAAAAACTGTTCATCACTTGGATTTTGATGCTCCGACTCGTGAACATGCTCACCAGCTCCCTGATGATCAGAAAC AAGAGGAATCTCTTTTGGAGGATGTGTGGACTTTATTAAGGGCTGGGAGATTGGAAGAGGCTTGTGATCTTTGCCGTTCAGCCGGACAGTCTTGGCGAGC TGCAACTTTAAGTCCTTTTGGAGGATTGACTTTGGTTCCTTCTATCGAGGCCCTATTGAAGAATGGGAGAAGTAGAACCCTCCAAGCCATTGAGCTTGAA AGTGGCATTGGTCACCAGTTGCGTCTATGGAAATGGGCTGCATATAGTGCATCGGAGAAAATTGCGGAGCAGAATGGTGGGAAATTTGAAGCAGGTGTTT ATGCAGCACAGTGTAGCAACTTAAAGCGCATGCTTCCAATTTGTACCGACTGGGAGTCAGCTTGCTGGGCCATGGCCAAGTCTTGGCTTGATGTTCAGGT TGATTTAGAATTAGCTGGCTTACAACCTGGGAGGTTAGTGCAGCTTAAGAACCATGGAGATAATACTGAAGACAGTCCTGTACAAAGTGATAATGGTTCT CATGCTTCGGGTGGACCAGATAGCTGGCCTCTACAGGTCAAGAATCAGCAACCAAGGAATCTTTCCGCTCTTCTTCAAAAACTCCATTCTGGGGAAATGG TTAATGAAGCTGTTATTAGAGGTTGCAAAGAGCAGCAGAGGCAAATTCAGATGAATATGATGCTGGGGAATATACCACACCTCCTTGACGTCATGTGGTC ATGGATAGCACCTTCTGAAGATGACGAGAATGTCTTCAGGCCTCATGGTGATCCGCAGCTGATCCGGTTTGGTGCCCATCTAGTGCTCGTCTTGAGGTAT TTACTTGCTGATGAAATGAAGGATTCCTTCAGAGAGAAGTTGATGAATGCTGGAGATCTAATTTTACACCTGTATGCCATGTTTCTATTTTCCAAGCAAC ATGAGGAGCTGGTTGGCATTTATGCTTCCCAGCTTGCACGTCACCGTTGCATAGATCTCTTTGTGCACATGATGGAACTAAGGCTAACCAGCAGTGTGCA TGTGAAATACAAGCTTTTTCTTTCTGCTATGGAGTACTTACCGTTCACTCCGGAAGATGATTCCAAAGGTAGTTTTGAAGAGATCATCGAAAGGGTTCTG TCTAGATCTCGTGAAATCAAAGTGAGAAAGTATGAAAAATCAGCAGAGGTGGCTGAACAGCACAGGTTGCAGAGCCTTCAAAAAGCTACAGTTATCCAAT GGCTCTGCTTTACGCCCCCATCAACAATTACCAATGTCAAGGACGTTAGTGGGAAACTGCTTATGCGGGCACTGGTACACAGCAACATGTTGTTCAGAGA ATTTGCACTGATCTCTATGTGGAGAGTGCCAGCAATGCCAATAGGTGCACATGCATTGCTTAGTTTGCTTGCTGAGCCCTTGAAGCGACTTTCGGAACTT CCTACTGGCTTCGAGGATTACATTTCTGAGAACCTAAAAGAGTTCCAGGACTGGAGTGAGTACTATTCATGTGATGCAACATACCGGAAGTGGCTCAAGG TTGAACTTGACAATGCGGAGGTACCTCCCACTGAGCTCTCCGGTGAAGAGAAGCAAAGAGCCATTACTGCAGCCAGAGAAGCATTGGACTGTTCTTTGTC ACTATTATTAAGAGATGAAAATCCTTGGTTGGCTTCAATAGACGATTCTGGATATGAATCAGAAAATCCTGTGTATCTTGAGTTACACGCCACTGCAATG CTCTGCCTGCCTTCCGGTGAATGTATGCTTCCGGATGCTACTGTTTGCACTGCATTAATGAGTGCGCTTTACTCTTCTGTGGGCGAGGAGGTTGTGCTTC ACCGCCAATTAATGGTAAAAGTTGCTATTTCAACGAGGGACAATTATTGTGTCGAGGTTATCTTACGGTGTCTGGCAGTAGAGGGCGATGGACTTGGGTC ACACCAAGCTAATGATGGTGGCATTCTAGCTACCGTCATAGCCGCTGGTTTCAAAGGGGAGCTTAACCGGTTCCAGCCCGGGGTCACAATGGAAATATCC AGATTAGATGCTTGGTATTCAAACGCAAGTGGCTCCCTCGAATCCCCTGCAACTTTCATCGTGCAGGGACTTTGCCGCAGGTGCTGTCTACCGGAACTAA TTCTTCGATGCATGGAGGTTTCTGTGTCTCTAATGGAATCAGGAAACACACTGGAGAGCCATGACGAATTGATTGAACTCGTTTCCTCTACCGAGACTGG GTTTCTCCATCTTTTTAGCCAGCAGCAGCTTCAGAGAGTATTTCACAACTACGACCCCATGCTTCGTCCTCAAGAGAAGGCAATCGAGTATCAAAGGGCA CTTACTGCTGCCAAGATTTATGCAAAACCGTTTGTTGGAGCTATGGATGGCCATGTAGATGCTGTTTTCCTGTATGGCGAAGAACCCGAATTACTTGAAA GGGTTTTTTTTCTGGCTCCATGGATGGAGATATTCGCCTGGGATCTAGCTTCTAGGAGAACTGTTTGTCAATTTCCTGGTCACCAAGGTGCCGTAAAAGG TTTAACAGTATCCACCGACGGAACCACCCTGATATCCTGCGGGATTGATTGCACTGTTAGGCTTTGGAGTGTACCAGTAGCTTCCATCATGGGATTAGAG GACCCCTCTAATAAGTCAGTTGAGGCAAAGGCAGTATATGTGGGGAAGAATGCTTATTTGTAA
AA sequence Show only first row Show all	>Lus10037684 pacid=23167194 polypeptide=Lus10037684 locus=Lus10037684.g ID=Lus10037684.BGIv1.0 annot-version=v1.0 MDMEMEASPAYFRPEDLTIREQYRRYGTWWLSKYGCISLCSKRHSISSSSPGQESTSSRFKDSRLLYDGQSIHSPTNAALLLEHIKQEADGMDSDHYDAM PARVQASAKRRSAIEGFSEADLLVDPELQTGSQSLKACKIEDESADSGEAVFGLFASLLDSAIQGLMPIPDLILRFERLCRNVSEDIRSQSNIRHRVLEE KLMRQKVQLLLDEAATWSLLWHLYGKVTEEHLEELIVSPPTSHVEACQFVANDHTAQLCLRIVQWLEGLASKSLDLESKVQEPRIGTYLPNSGIWHNTQR LLKKGTSGKKTVHHLDFDAPTREHAHQLPDDQKQEESLLEDVWTLLRAGRLEEACDLCRSAGQSWRAATLSPFGGLTLVPSIEALLKNGRSRTLQAIELE SGIGHQLRLWKWAAYSASEKIAEQNGGKFEAGVYAAQCSNLKRMLPICTDWESACWAMAKSWLDVQVDLELAGLQPGRLVQLKNHGDNTEDSPVQSDNGS HASGGPDSWPLQVKNQQPRNLSALLQKLHSGEMVNEAVIRGCKEQQRQIQMNMMLGNIPHLLDVMWSWIAPSEDDENVFRPHGDPQLIRFGAHLVLVLRY LLADEMKDSFREKLMNAGDLILHLYAMFLFSKQHEELVGIYASQLARHRCIDLFVHMMELRLTSSVHVKYKLFLSAMEYLPFTPEDDSKGSFEEIIERVL SRSREIKVRKYEKSAEVAEQHRLQSLQKATVIQWLCFTPPSTITNVKDVSGKLLMRALVHSNMLFREFALISMWRVPAMPIGAHALLSLLAEPLKRLSEL PTGFEDYISENLKEFQDWSEYYSCDATYRKWLKVELDNAEVPPTELSGEEKQRAITAAREALDCSLSLLLRDENPWLASIDDSGYESENPVYLELHATAM LCLPSGECMLPDATVCTALMSALYSSVGEEVVLHRQLMVKVAISTRDNYCVEVILRCLAVEGDGLGSHQANDGGILATVIAAGFKGELNRFQPGVTMEIS RLDAWYSNASGSLESPATFIVQGLCRRCCLPELILRCMEVSVSLMESGNTLESHDELIELVSSTETGFLHLFSQQQLQRVFHNYDPMLRPQEKAIEYQRA LTAAKIYAKPFVGAMDGHVDAVFLYGEEPELLERVFFLAPWMEIFAWDLASRRTVCQFPGHQGAVKGLTVSTDGTTLISCGIDCTVRLWSVPVASIMGLE DPSNKSVEAKAVYVGKNAYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14120			unknown protein		Lus10037684 [exp]	0	1
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015202 [exp]	1.7	0.9522
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003700 [exp]	2.4	0.9605
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023426 [exp]	3.7	0.9529
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022944 [exp]	5.9	0.9424
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001585 [exp]	6.0	0.9505
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10005012 [exp]	8.0	0.9345
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10036506 [exp]	9.9	0.9296
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	11.5	0.9357
AT4G30990			ARM repeat superfamily protein...		Lus10026222 [exp]	13.3	0.9226
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	14.5	0.9371

Compare expression of checked genes

Lus10037684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.