Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G40010 477 / 4e-170 SNRK2-7, SNRK2.7, SRK2F SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-7, SNF1-related protein kinase 2.7 (.1) AT1G78290 471 / 5e-168 SRK2C, SNRK2-8, SNRK2 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) AT4G33950 467 / 5e-166 ATOST1, P44, SRK2E, SNRK2-6, SnRK2.6, OST1 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) AT5G66880 462 / 4e-164 SNRK2-3, SNRK2.3, SRK2I SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) AT1G60940 454 / 1e-160 SNRK2-10, SNRK2.10, SRK2B SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) AT1G10940 453 / 2e-160 ASK1, SNRK2-4, SNRK2.4, SRK2A SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) AT5G63650 447 / 2e-158 SNRK2-5, SNRK2.5, SRK2H SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) AT5G08590 444 / 3e-157 ASK2, SNRK2-1, SNRK2.1, SRK2G ARABIDOPSIS SKP1-LIKE1, ARABIDOPSIS SERINE/THREONINE KINASE 2, SNF1-related protein kinase 2.1 (.1) AT3G50500 444 / 5e-157 SPK-2-2, SNRK2-2, SNRK2.2, SRK2D SNF1-RELATED PROTEIN KINASE 2-2, SNF1-related protein kinase 2.2 (.1.2) AT2G23030 421 / 2e-148 SNRK2-9, SnRK2.9 SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNF1-related protein kinase 2.9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015676 [exp] 644 / 0 AT4G40010 481 / 5e-171 SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-7, SNF1-related protein kinase 2.7 (.1) Lus10004382 [exp] 490 / 2e-175 AT4G33950 518 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10040179 [exp] 488 / 1e-174 AT4G33950 516 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10004748 [exp] 476 / 5e-170 AT4G33950 497 / 5e-178 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10007833 [exp] 476 / 6e-170 AT4G33950 496 / 2e-177 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10020997 [exp] 473 / 3e-168 AT4G33950 637 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10004291 [exp] 454 / 9e-161 AT5G63650 565 / 0.0 SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) Lus10001367 [exp] 454 / 1e-160 AT1G60940 599 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) Lus10019225 [exp] 453 / 1e-160 AT1G10940 568 / 0.0 SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096400 [exp] 518 / 0 AT4G33950 514 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.002G099700 [exp] 508 / 0 AT1G78290 523 / 0.0 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) Potri.005G072600 [exp] 507 / 0 AT1G78290 497 / 4e-178 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) Potri.003G084100 [exp] 489 / 4e-175 AT4G33950 527 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.005G162500 [exp] 489 / 5e-175 AT1G78290 511 / 0.0 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) Potri.004G145500 [exp] 464 / 1e-164 AT4G33950 624 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.009G106900 [exp] 461 / 2e-163 AT4G33950 600 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.004G218200 [exp] 459 / 1e-162 AT1G60940 593 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) Potri.T011000 [exp] 457 / 2e-162 AT5G63650 583 / 0.0 SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) Potri.T011001 [exp] 457 / 2e-162 AT5G63650 583 / 0.0 SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10037685 pacid=23167234 polypeptide=Lus10037685 locus=Lus10037685.g ID=Lus10037685.BGIv1.0 annot-version=v1.0 ATGGAGCGGTACGAGGAAGTGAAAGATATCGGGTCGGGAAATTTCGGGTTCGCCAAGCTTGTTCGGGACAAATGGAGCGGGGAGCTTTTCGCCGTCAAGT ATATCGAAAGAGGAAACAAGAGGGAGATCATGAACCACCGATCGTTGAAGCACCCGAACATCGTACGGTTCAAAGAGGTGCTGCTGACGTCGAGCCATTT GGCGATAGTCATGGAGTATGCAGCCGGCGGTGAGCTTTTCGAGAGGATTTGCAGTGCCGGTCGGTTCAGTGAAGACGAGGCGAGATATTTCTTCCATCAA CTCATTTCAGGAGTGAGTTATTGCCATTCCATGCAAATCTGCCACAGAGATCTGAAGCTAGAGAACACACTCTTAGACGGCAGCCCAGCACCCCGTCTCA AAATCTGCGACTTCGGGTATTCGAAATCCGCCGTGCTACATTCTCAGCCGAAATCCACCGTGGGAACGCCGGCCTACATAGCGCCGGAGGTCTTGTCAAG GAAAGAATACGACGGCAAGATAGCGGATGTTTGGTCATGTGGGGTTACGTTGTATGTCATGTTGGTTGGAGGCTATCCATTCGAAGATCCTGACGATCCA AGAAACTTTAGGAAAACCATTCAGAGGATTCTTAGCGTGCACTACTCGATCCCGGATTACGTTCGGATTTCGACGGACTGCAAGCATCTTTTGTCCCGGA TTTTCGTCGCTGATCCCGAAAAGAGGATAAGCATCCCAGAGATAAAGAAGCACCCATGGTTTCTGAAGAACTTGGAGCCAGAGGAATTTGAACTACCCAA CCACGATCAGAACGACGGCGTAATAGTAACCGATCAGTTGTCCCGCCGGCAAACGATGGACGAAGTAGCGACCATAATCCAGGAAGCAAGGAGAGGAGGA GATCTGCAGGGGCTCAAACTGGGTGGGAATTTGATTGGATATTTCGAAGGAGGGAGCATGGAGCTCGATGATTTGGATGCCGATGTCGACGTCGACGATG TTGAGACCAGCGGCGACTTTGTTTGCGCTTTGTAA
AA sequence Show only first row Show all	>Lus10037685 pacid=23167234 polypeptide=Lus10037685 locus=Lus10037685.g ID=Lus10037685.BGIv1.0 annot-version=v1.0 MERYEEVKDIGSGNFGFAKLVRDKWSGELFAVKYIERGNKREIMNHRSLKHPNIVRFKEVLLTSSHLAIVMEYAAGGELFERICSAGRFSEDEARYFFHQ LISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSAVLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGGYPFEDPDDP RNFRKTIQRILSVHYSIPDYVRISTDCKHLLSRIFVADPEKRISIPEIKKHPWFLKNLEPEEFELPNHDQNDGVIVTDQLSRRQTMDEVATIIQEARRGG DLQGLKLGGNLIGYFEGGSMELDDLDADVDVDDVETSGDFVCAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G40010		SNRK2-7, SNRK2....	SUCROSE NONFERMENTING 1-RELATE...		Lus10037685 [exp]	0	1
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	2.2	0.9123
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008668 [exp]	3.5	0.8843
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	5.7	0.9096
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10019247 [exp]	8.0	0.8695
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10022883 [exp]	9.7	0.8931
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018888 [exp]	11.0	0.8964
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10022915 [exp]	12.0	0.8803
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10005428 [exp]	13.0	0.8598
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10012531 [exp]	13.8	0.8880
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024174 [exp]	15.1	0.8795

Compare expression of checked genes

Lus10037685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.