Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14110 304 / 1e-104 FLU FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015677 [exp] 493 / 4e-178 AT3G14110 312 / 8e-108 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10013168 [exp] 365 / 1e-127 AT3G14110 325 / 9e-113 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10008131 [exp] 358 / 6e-125 AT3G14110 333 / 8e-116 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166000 [exp] 324 / 4e-111 AT3G14110 371 / 4e-129 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037686 pacid=23167160 polypeptide=Lus10037686 locus=Lus10037686.g ID=Lus10037686.BGIv1.0 annot-version=v1.0 ATGGTGGCTGTCCATTGTTTTGCTTCTCCGCCGCGGGAACTCTTCATCTCCGGGAAGCTCCATTGTGCCCTGCTCAAAGTAGGCGGGTTATCATTTCGGC TTAGAAGAAATGCAAGGCATTTGGCCAGAGGACATCAGGATATCTTGCTTAAACTATTCTCACCTCATCAGGGCAAAACGCTTTCACGATCATCAGCGAT TATAGCATCGTTTTCTACTGCATACGTCATCGCTGCACCTTCGGAAGCATTGGCTCAAACCTGCGAAACCAATAGCTCGTTCCTCAACATGCCTGCATTG CTGTTCGTCGCGCTGATTGGGGCCACAGTTGGAGGGTTGCTAGCACGTCAGAGGAAAGGAGAGCTGAAGCATCTGAACGAGCAACTACGGCAGATCAATG GTGCTCTAAGACGACAAGCAAAGATCGAGTTGTACGCCCCCAAGCGGAGCTATGCACCCGTCGGTAGCAGGATCCCAGACAAGGTGGTAATCGTTCCGAG GAAGCAACAGCTGGTCCCTCATTTGAGAAGTGGGAAGAATCATTTGAGGAACCAAGATCTGAAAACGGCGTATGATGAGTTCAAGGTTGCACTTGGAATC CCTCAGGATTTGGGAGATCCCATCAAGGAGAAGAAAACTGCAAGAGGCTTAGGAGCTTCCTTGCAAAGACAAGGGCAGTACCGCGAAGCGATAAAGTATC ACTCGATGGTTCTCGACATATCGAAGCAGGAAGATGAAGTGCCGGGTAACACGGAGGCGTTTGGAGCTATTGCAGACTGTTACACCGAGTTAGGTGATCT TGAGCAAGCTGGGAAGTTCTATGATCAATACATTGCAAGGCTAGAAACCGATTGA
AA sequence Show only first row Show all	>Lus10037686 pacid=23167160 polypeptide=Lus10037686 locus=Lus10037686.g ID=Lus10037686.BGIv1.0 annot-version=v1.0 MVAVHCFASPPRELFISGKLHCALLKVGGLSFRLRRNARHLARGHQDILLKLFSPHQGKTLSRSSAIIASFSTAYVIAAPSEALAQTCETNSSFLNMPAL LFVALIGATVGGLLARQRKGELKHLNEQLRQINGALRRQAKIELYAPKRSYAPVGSRIPDKVVIVPRKQQLVPHLRSGKNHLRNQDLKTAYDEFKVALGI PQDLGDPIKEKKTARGLGASLQRQGQYREAIKYHSMVLDISKQEDEVPGNTEAFGAIADCYTELGDLEQAGKFYDQYIARLETD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10037686 [exp]	0	1
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10041562 [exp]	1.4	0.8004
AT4G17486			PPPDE putative thiol peptidase...		Lus10043293 [exp]	3.3	0.8156
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10008202 [exp]	6.2	0.7995
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	8.4	0.7846
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10030311 [exp]	9.2	0.7648
AT1G78790			unknown protein		Lus10042781 [exp]	14.7	0.7095
AT3G51840		ATG6, ATSCX, AC...	acyl-CoA oxidase 4 (.1)		Lus10027811 [exp]	15.5	0.7276
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10017172 [exp]	20.9	0.7884
AT3G11590			unknown protein		Lus10005200 [exp]	23.2	0.6838
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10012502 [exp]	36.0	0.6927

Compare expression of checked genes

Lus10037686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.