Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72460 199 / 2e-59 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 173 / 2e-49 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 167 / 3e-47 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 162 / 4e-45 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 157 / 1e-43 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 153 / 3e-42 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT3G42880 141 / 7e-38 Leucine-rich repeat protein kinase family protein (.1) AT1G10850 139 / 5e-37 Leucine-rich repeat protein kinase family protein (.1) AT1G60630 134 / 3e-35 Leucine-rich repeat protein kinase family protein (.1) AT5G20690 131 / 3e-34 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015678 [exp] 431 / 9e-149 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10008128 [exp] 250 / 4e-79 AT1G72460 412 / 8e-137 Leucine-rich repeat protein kinase family protein (.1) Lus10013165 [exp] 245 / 2e-76 AT5G20690 470 / 5e-158 Leucine-rich repeat protein kinase family protein (.1) Lus10005175 [exp] 174 / 3e-50 AT5G20690 417 / 1e-138 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 174 / 1e-49 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 170 / 4e-48 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027645 [exp] 159 / 3e-47 AT1G72460 211 / 8e-64 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 157 / 2e-43 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 153 / 6e-42 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068800 [exp] 241 / 6e-75 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 235 / 4e-72 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 174 / 7e-50 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 164 / 3e-46 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 164 / 4e-46 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 159 / 3e-44 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 158 / 6e-44 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 152 / 7e-42 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 145 / 3e-39 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G144900 [exp] 133 / 4e-35 AT1G10850 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10037687 pacid=23166996 polypeptide=Lus10037687 locus=Lus10037687.g ID=Lus10037687.BGIv1.0 annot-version=v1.0 ATGGCCTGGAAATGGCTCTTCTCCCGCCGGCCAAATTTCCTTCTTCTCATCCTCCTACTCGCCACCGTCGTCTCCTTCTCCTCCTCCGCCTCCGCCGATT CCCTTTCAGAGTCCGACGCCTTGATCCGCTTGAAAACCTCCCTTATCAATGCCACCGATCTCGTCTCCTGGATCCCCGGCACCCCTCCTTGCCAGGGCAA GCTCGGCTGGGACGGCCTCATCTGCTCCAACGACGCCGTCACCGGCATCCGCCTCGAGAACATGGGATTGTCCGGCGACATCGACGTCGACGCGCTTCTC GCCCTCCCAAACCTCCGGGGAGTCAGCTTCGCGTTCAATTCCTTCACCGGAAAGATCCCCGATCTCAACCGGATCAGCAACCTGAAAGCCGTTTATCTCC ACGGCAACCAATTCTCCGGCGAAATCCCCTCCGATTACTTTCTCAAAATGATTGCTCTAAAAAAACTCTGGCTCGCCAACAACAAATTCTCCGGCCAGAT CCCTTCCTCCTTAGGCCAGGTGGCGAATCTGTACGAATTGCAATTGGAGAACAACCGATTCGGCGGGAAAATCCCTAGCTTGAAAGCTGATAAATTGGGG AATTTCAACGTCTCGAATAACAACCTTACGGGCGAAATCCCTAAGGAACTTGTGAAATTCCCTGCCGCGGCTTTCGGCGGGAACCCTGACCTCTGCGGGC AGAACATCCCGAAGAAATGCGCCGCCGCCGTCCCGCCGGTTAGCGGCACCGCCCCGCTGTCGGAGGTGGCTCAGAACACAGCCAGCGATCACGCCATTCC GATGACGCCATTCCCGGAATGGATGGGAGCAATTTCAAAAACTCCACGATCGGAATCATAA
AA sequence Show only first row Show all	>Lus10037687 pacid=23166996 polypeptide=Lus10037687 locus=Lus10037687.g ID=Lus10037687.BGIv1.0 annot-version=v1.0 MAWKWLFSRRPNFLLLILLLATVVSFSSSASADSLSESDALIRLKTSLINATDLVSWIPGTPPCQGKLGWDGLICSNDAVTGIRLENMGLSGDIDVDALL ALPNLRGVSFAFNSFTGKIPDLNRISNLKAVYLHGNQFSGEIPSDYFLKMIALKKLWLANNKFSGQIPSSLGQVANLYELQLENNRFGGKIPSLKADKLG NFNVSNNNLTGEIPKELVKFPAAAFGGNPDLCGQNIPKKCAAAVPPVSGTAPLSEVAQNTASDHAIPMTPFPEWMGAISKTPRSES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72460			Leucine-rich repeat protein ki...		Lus10037687 [exp]	0	1
AT4G35783		RTFL6, DVL17	DEVIL 17, ROTUNDIFOLIA like 6 ...		Lus10028393 [exp]	14.0	0.9488
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10011817 [exp]	20.0	0.9455
AT2G24180		CYP71B6	cytochrome p450 71b6 (.1)		Lus10017697 [exp]	24.6	0.9446
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	28.8	0.9438
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	31.8	0.9434
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10025183 [exp]	33.8	0.8786
AT1G04100	AUX_IAA	IAA10	indoleacetic acid-induced prot...		Lus10001501 [exp]	35.5	0.9426
AT2G04220			Plant protein of unknown funct...		Lus10043317 [exp]	38.2	0.9426
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10004556 [exp]	41.2	0.9414
AT4G21480		STP12	sugar transporter protein 12 (...		Lus10040994 [exp]	43.2	0.9408

Compare expression of checked genes

Lus10037687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.