Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42880 339 / 2e-111 Leucine-rich repeat protein kinase family protein (.1) AT5G20690 335 / 1e-109 Leucine-rich repeat protein kinase family protein (.1) AT1G72460 265 / 1e-82 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 242 / 1e-73 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 235 / 3e-71 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 222 / 2e-66 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT3G20190 221 / 1e-65 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 219 / 2e-65 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 219 / 9e-65 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 206 / 4e-60 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015678 [exp] 629 / 0 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10013165 [exp] 441 / 8e-151 AT5G20690 470 / 5e-158 Leucine-rich repeat protein kinase family protein (.1) Lus10008128 [exp] 395 / 1e-133 AT1G72460 412 / 8e-137 Leucine-rich repeat protein kinase family protein (.1) Lus10038128 [exp] 347 / 2e-117 AT5G20690 462 / 2e-159 Leucine-rich repeat protein kinase family protein (.1) Lus10005175 [exp] 310 / 7e-101 AT5G20690 417 / 1e-138 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 244 / 4e-74 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 244 / 6e-74 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 234 / 3e-72 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 226 / 5e-71 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G139700 [exp] 365 / 2e-121 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 357 / 5e-117 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 351 / 1e-115 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 248 / 2e-75 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 240 / 3e-73 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 239 / 2e-72 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 236 / 1e-71 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 232 / 4e-70 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 215 / 3e-66 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 219 / 3e-65 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10037688 pacid=23167092 polypeptide=Lus10037688 locus=Lus10037688.g ID=Lus10037688.BGIv1.0 annot-version=v1.0 ATGCAGAGGAAAGACGACGACAGTGATGACGAAGATGAAGATTTCGAGAACGCGGCCGCAAGCGCAGGAATCGGGGAGGACGAAGACGGCGGAGGGTCCG AGCTACCGGTCGTACACGCGAGAGGGTGCAGGCCACAGGGTGCCGGCGGCGGGAACAAGAACGTGGGGGAGTTTGTGATGATGAACGAGGACAAGGGAGT GTTCGGGCTGCCGGACTTGATGAAGGCGGCGGCGGAGATTCTCGGGAGTGGGGGATTGGGTTCGTCGTACAAGGCGGTGATCTCCGGAGGAAAAGCGTTG GTAGTGAAGAGGATTAGGGAGATGAACGCCATGGGAAAGGACGGGTTCGAAGCAGAGATCAGAATGCTGGGGAAGATCAGGCATCCGAATGTGCTGACTC CTCTGGCTTTCCATTACCGCAAGGACGAGAAGTTGCTCATCTACGAGTTCGTCCCCACCGGCAGCTTGCTCTTCTTGTTGCACGGGGGCCGTGGAACGAC GTCGCGTCAAGGACTGAACTGGGTATCAAGGCTCCGCATAGTGAAAGGAATCGCAAGAGGGTTAAGCTTCATTCATTCCGAGCTAGGAGGCACGAATCTA CCTCACGGGAACTTGAAATCGAGCAACATATTGGTTGGACCGGACAATGAGCCGAGAGTATCCGAGTACGGGTTCAGCTCCCTGATCAACTCGAACGTGA TCACCAAGGCCCTGCTGGCCCACAAGTCCCCCGAGGCACTATCCCACAACGTTGTTTCACCTAAATCCGACGTGTTCTGTATGGGCATTCTGATCCTGGA AATCATGACCGGGAAGGTCCCTTCCCAGTATCCAAGCTCCGGCTCAGCCGGAACCGATCTGGTCCAGTTGGCCGAATCGGCCCAGGGAAGGGAAGCTGAG TTGCTCGACCCGGAAATCGCGGGCGCTTCCGGGTCGGTCGGGCAGATGGTGAGGATGATCAAAATCGCGACTCTTTGTGCTCACAGCGTTCCCGAGCAAA GACTGGACTTGAGAGAAGCTACAAAGAGGATCGACGAGATACAAATCGAGGATAGTTCTATTCCGGAACCGGCTAAGCATCATCATAATCACCATCATGA CAATAAGGAGCGAAGGAAGAAGGGTCGTGGAAGCCGGAGTAGCTTATCGACCGATTTTAGTGAAACCTCGGGATCCTAA
AA sequence Show only first row Show all	>Lus10037688 pacid=23167092 polypeptide=Lus10037688 locus=Lus10037688.g ID=Lus10037688.BGIv1.0 annot-version=v1.0 MQRKDDDSDDEDEDFENAAASAGIGEDEDGGGSELPVVHARGCRPQGAGGGNKNVGEFVMMNEDKGVFGLPDLMKAAAEILGSGGLGSSYKAVISGGKAL VVKRIREMNAMGKDGFEAEIRMLGKIRHPNVLTPLAFHYRKDEKLLIYEFVPTGSLLFLLHGGRGTTSRQGLNWVSRLRIVKGIARGLSFIHSELGGTNL PHGNLKSSNILVGPDNEPRVSEYGFSSLINSNVITKALLAHKSPEALSHNVVSPKSDVFCMGILILEIMTGKVPSQYPSSGSAGTDLVQLAESAQGREAE LLDPEIAGASGSVGQMVRMIKIATLCAHSVPEQRLDLREATKRIDEIQIEDSSIPEPAKHHHNHHHDNKERRKKGRGSRSSLSTDFSETSGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G42880			Leucine-rich repeat protein ki...		Lus10037688 [exp]	0	1
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10006943 [exp]	1.0	1.0000
AT4G21480		STP12	sugar transporter protein 12 (...		Lus10040994 [exp]	9.9	0.9986
AT1G50310		ATSTP9	sugar transporter 9 (.1)		Lus10013441 [exp]	10.1	0.9981
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008639 [exp]	13.5	0.9997
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10022710 [exp]	13.7	0.9991
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10009469 [exp]	16.5	0.9997
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	19.1	0.9996
					Lus10004351 [exp]	21.3	0.9996
AT3G12880			Plant invertase/pectin methyle...		Lus10031197 [exp]	21.7	0.9776
					Lus10005378 [exp]	23.4	0.9996

Compare expression of checked genes

Lus10037688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.