Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72490 233 / 1e-75 unknown protein AT1G17400 221 / 1e-70 unknown protein AT1G19115 68 / 1e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015679 [exp] 453 / 2e-160 AT1G72490 239 / 1e-76 unknown protein Lus10008123 [exp] 248 / 4e-81 AT1G72490 200 / 2e-62 unknown protein Lus10013160 [exp] 244 / 6e-80 AT1G72490 202 / 1e-63 unknown protein Lus10039921 [exp] 62 / 6e-11 AT1G17400 80 / 2e-18 unknown protein Lus10027660 [exp] 59 / 4e-10 AT1G17400 81 / 5e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068300 [exp] 281 / 6e-95 AT1G72490 279 / 2e-94 unknown protein Potri.001G166700 [exp] 274 / 6e-92 AT1G72490 269 / 2e-90 unknown protein Potri.006G140100 [exp] 132 / 8e-37 AT1G72490 143 / 2e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037689 pacid=23167364 polypeptide=Lus10037689 locus=Lus10037689.g ID=Lus10037689.BGIv1.0 annot-version=v1.0 ATGCAAAACAAGTTAAGTGGGAAGCAAGACACGAATGGTAGTCACAATGTCGGTAATACTAAAAAGCCAACAACCGCATCGGCTGGTCCTCCATCTACTC ATTTCAAGAACCAAGAGCCTAGAGAGGAATTCAGTGGTTGGCCACATGGGTTGCTAGCCATTGGAACATTTGGAAACACCGACAACAATAACGACGAAAT CGAACGCGCAGTTGATGTCGAAGAAGACAACAATGGTGCGTTGGAAGATCATGATCTAGCAGCGTCGGTGCCTGACGATCATCAGGGTTTCACTCATGAG GAGATCGGAAATTTACAAAAGGAGCTGACAAAATTATTGACTCGAAAGCCGAAGCAGGACAAAGAGAAAGAGTTCATTGCAAACTTGCCCTTAGACAGAT TTCTAAACTGTCCGTCGAGCCTGGAAGTGGACAGGAGGCTCAGCACGGGCGTGATGAGTAGTTGGTCATTGGACGAGCAGAGTATAAAAGAGGAAGAAGA TGACATTGAGAGGACGATTAGTGTCATACTTGGTAGATGCAAAGACATTCAAGCCAATAAGAAGAAAGACAATAAGGCCATTGGGAAGAAATCCATCTCT TTCCTTTTGAAGAAGATGTTTGTTTGTTCAAGTGGGTTTGCTCCTCAGCCTAGCTTGAGAGATACCCTTTCCGAATCAAGAATAGAGAAGTTATTGAAGA CAATATTGCACAAAAAGATAAACTCTCAAAACAGGGCATCGGGGGCTTCCTCCATAAAAAGATACATTGAAGGGGACAAACAACAAAACATGATCAACGG CCAGAGCATGAGATCAGATGAGTTGGATCAAGAACAAGAAGAGGATGGTCAACGGCGACGTAAAACCGCCACCGACGGGAGTAAATGGGTCAAAACCGAT TCCGAGTATATCGTTCTAGAGATTTAA
AA sequence Show only first row Show all	>Lus10037689 pacid=23167364 polypeptide=Lus10037689 locus=Lus10037689.g ID=Lus10037689.BGIv1.0 annot-version=v1.0 MQNKLSGKQDTNGSHNVGNTKKPTTASAGPPSTHFKNQEPREEFSGWPHGLLAIGTFGNTDNNNDEIERAVDVEEDNNGALEDHDLAASVPDDHQGFTHE EIGNLQKELTKLLTRKPKQDKEKEFIANLPLDRFLNCPSSLEVDRRLSTGVMSSWSLDEQSIKEEEDDIERTISVILGRCKDIQANKKKDNKAIGKKSIS FLLKKMFVCSSGFAPQPSLRDTLSESRIEKLLKTILHKKINSQNRASGASSIKRYIEGDKQQNMINGQSMRSDELDQEQEEDGQRRRKTATDGSKWVKTD SEYIVLEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72490			unknown protein		Lus10037689 [exp]	0	1
AT1G72490			unknown protein		Lus10015679 [exp]	2.4	0.9787
AT5G47540			Mo25 family protein (.1)		Lus10036523 [exp]	6.3	0.9799
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10032355 [exp]	11.3	0.9856
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	15.0	0.9748
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	15.0	0.9746
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	17.1	0.9827
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10037652 [exp]	19.4	0.9443
AT4G16230			GDSL-like Lipase/Acylhydrolase...		Lus10016916 [exp]	20.6	0.9810
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	24.1	0.9806
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10039979 [exp]	24.6	0.9363

Compare expression of checked genes

Lus10037689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.