Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40980 457 / 6e-152 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015685 [exp] 1263 / 0 AT2G40980 444 / 4e-146 Protein kinase superfamily protein (.1) Lus10035407 [exp] 554 / 0 AT2G40980 760 / 0.0 Protein kinase superfamily protein (.1) Lus10031009 [exp] 551 / 0 AT2G40980 764 / 0.0 Protein kinase superfamily protein (.1) Lus10034860 [exp] 44 / 0.0007 AT3G10660 254 / 6e-77 calmodulin-domain protein kinase cdpk isoform 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G137600 [exp] 910 / 0 AT2G40980 523 / 1e-177 Protein kinase superfamily protein (.1) Potri.010G173100 [exp] 570 / 0 AT2G40980 750 / 0.0 Protein kinase superfamily protein (.1) Potri.008G083300 [exp] 569 / 0 AT2G40980 745 / 0.0 Protein kinase superfamily protein (.1) Potri.010G247400 [exp] 44 / 0.0006 AT3G10660 253 / 2e-76 calmodulin-domain protein kinase cdpk isoform 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037692 pacid=23167078 polypeptide=Lus10037692 locus=Lus10037692.g ID=Lus10037692.BGIv1.0 annot-version=v1.0 ATGGGTGAGTCGAAATTCTCCGTCTTTCTTTCTTCACTTCCAGCTTTGAAGTTGCTTTTCTGCTGTAGCTACAAGTTCTTGGGCAATGCTTTCTTGGGCT TCGAAGAAAACGGTGCCAGTGCGTCACAAAGGGAATGCTTGAATGGAAGTTATAGGAAGACCAGAACAGGTCTGTCGCAGCACAACGACTTGGATTCGTC CCTTGGAAGAAGTTTGGATGGTAGTTTCAGGATGTCAGGTTCTGTGTTATCTGGAAGGAGTTTATCGGATCTTTCCACGACAAGCAAGTCGGTTCCTAGT TCTAGAAAACTGTTCAAGTCTCTGAAGGAGTGTGCACGAAACCTCGTCAGCCTCAATCTATTCACACATGAACTCGAAAGCTGGGTTTCGCAACAAATTT TCAGGTCTCCTTTCTCCATTGATGAACTATTGAACCTTGACTTAGCACTGGAAGGAGCCCCTTTCAAGCAGCTATGCCGTATGCCTTGCTCCACTACTTA TGCATCTAACGACACACAGGGCCACTATCTCGCGATAGAGGACTTCCTCCACACGGTAATGACCAGTTTGTGGCATACATTTTGGCACAAAAGTCGTCCA TCTCCATTTAGTATATCGTGTCCTCGTAAACTCGGATCGAAATTCTATACTTCTGTAGAGAAAGCTGCTTCTAGAGGACGGCTCGAAGAGCTCCAAGGTC TGGCACTCGTATTGAAATCCGAGGATCATTCACATTGGGACCAAGTGATTGAGTTCGCCTTATTTAGACCGAATATATTGTCTGATAATGAACTGAAGTT ATCTCCAGGGATTATCTGTGAAGCCATATTTTTCGGTGTTCATATACTTTTTGCTAGAAGCTTGAGGAACAAGCTAAGTATTACAGCGGGCAGCAGATCT TTTCTTTACATTTTGGTTTGTGACTCGACATTTGGCGGTGTGGTAAAGATCGAAGGCGATCTGAGTCAACTCGAGCTGAACTATACTGATAATCCTTATG AATCTGTAACCGAATGGATCAAATGCCATTCCGAAATTCAAATTTCACCGGTTGACCAGGTGTGGAACAAGCTAGGCAATGCAAACTGGGGAGACATCGG TACCTTGCAAGTAATTTTAGCGACATTCTACTCGATGGTCCAATTGATCGGTTCGCCTAAAAAGTCTGTAGCTTCGTTGGCATCCGAACATGGCCTCCGG CTGCAGAAACGAAAAGTGGAGCGTCAGGTGATCAGAAATGAGTCCTTCCAGCATGATCATGGAGAGATCACAGAGGTTTGTACTCCGAAGAGACAAGAAT CGCGATTGAGACTTCGACCGGGAGAAATGCTAGTGGTGGATGATCAAGACCAAGGGCAGAAAAGATTCCGAATCCAGGACTCTTCAGTTGGAGGGAATCA TTTCCTTTACAGTGCAGCTGATGTGGATTGTCCAGCAAAGTTACTGACTTTACACGTCGGTGCACATCCCTCGAAACTCGAGCCATGCTGGGAAGACATG AGTCTATGGTATCAAGTACAGAGGCAGACAAAAGTATTGAACATCTTGGAAAAGAAAGGATCTTTTCACAACAAAAGTCTTCCGGAGAAAGTTGCATCCG GTAGAGTGTTGCATTCCGGTCAATGCACCCGACAGAACCCTCGAGGAACGTGTGATCATCCGGTCTGTGGCACACCGGTACTCGTGACGTCTCCTTTAGG GGAGCCGGTATCATTCATTGTCGTGAAAGATGGAGCCTTTCGGTCTGATGAGGCGATTCGTTGCTGTAGAGACTGCCTTGCAGGGTTAGGGAGTGCTGCA GCTGCCAATGTCCTACATGGCGATATCTGTCCTGAAAATATCGTTCGGTTTCTTGATCAACAAGGCACCACTAGACGGAGATTTTCGTACGTGGTTACTT CGTGGGGGCGAGCGGTTTTGGAGGAAAAGGACAGCGCTGCGATAAATTTACAATTCTCGTCATCCTATGCACTTCAGCACGGGAAGCTATGTCCATCATC TGATGCCGAGAGTCTCGTGTATCTCTTGTTGTTCGTATGTGGAAGGAGCGGGACGATGCAGCACGATTCCATCGAATCGGCGTTGCAATGGAGGGAGAGA AGCTGGGGGGAGAGGTTGATCCAGCGAGAGCTCGGTGAGGTGTCACCGATTTTGAAGGCCTTTGCTGACTATGTTGATAGCCTTTCTGGAACTCCTTACC CTGTTGAATATGAAGTGTGGGTGGAAAGATTGAGTAGAGCCACCAATGGTGGCGGCTCGGGGGATAAGGGCAAAATGATGATCGAGGATGACCTGGCTTT TTCGAAACTGATGCTGGATGATGATGTGGATGTTGCTGAGTCTTCTTCTTCAAGAAACTGA
AA sequence Show only first row Show all	>Lus10037692 pacid=23167078 polypeptide=Lus10037692 locus=Lus10037692.g ID=Lus10037692.BGIv1.0 annot-version=v1.0 MGESKFSVFLSSLPALKLLFCCSYKFLGNAFLGFEENGASASQRECLNGSYRKTRTGLSQHNDLDSSLGRSLDGSFRMSGSVLSGRSLSDLSTTSKSVPS SRKLFKSLKECARNLVSLNLFTHELESWVSQQIFRSPFSIDELLNLDLALEGAPFKQLCRMPCSTTYASNDTQGHYLAIEDFLHTVMTSLWHTFWHKSRP SPFSISCPRKLGSKFYTSVEKAASRGRLEELQGLALVLKSEDHSHWDQVIEFALFRPNILSDNELKLSPGIICEAIFFGVHILFARSLRNKLSITAGSRS FLYILVCDSTFGGVVKIEGDLSQLELNYTDNPYESVTEWIKCHSEIQISPVDQVWNKLGNANWGDIGTLQVILATFYSMVQLIGSPKKSVASLASEHGLR LQKRKVERQVIRNESFQHDHGEITEVCTPKRQESRLRLRPGEMLVVDDQDQGQKRFRIQDSSVGGNHFLYSAADVDCPAKLLTLHVGAHPSKLEPCWEDM SLWYQVQRQTKVLNILEKKGSFHNKSLPEKVASGRVLHSGQCTRQNPRGTCDHPVCGTPVLVTSPLGEPVSFIVVKDGAFRSDEAIRCCRDCLAGLGSAA AANVLHGDICPENIVRFLDQQGTTRRRFSYVVTSWGRAVLEEKDSAAINLQFSSSYALQHGKLCPSSDAESLVYLLLFVCGRSGTMQHDSIESALQWRER SWGERLIQRELGEVSPILKAFADYVDSLSGTPYPVEYEVWVERLSRATNGGGSGDKGKMMIEDDLAFSKLMLDDDVDVAESSSSRN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40980			Protein kinase superfamily pro...		Lus10037692 [exp]	0	1
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10034488 [exp]	1.0	0.9092
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10019044 [exp]	1.4	0.9009
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10041143 [exp]	4.5	0.8796
AT3G25700			Eukaryotic aspartyl protease f...		Lus10041494 [exp]	7.3	0.8532
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	9.4	0.8492
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10026095 [exp]	12.5	0.8444
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10014749 [exp]	13.3	0.8159
AT5G26850			Uncharacterized protein (.1.2....		Lus10029842 [exp]	18.4	0.8849
AT3G07210			unknown protein		Lus10038194 [exp]	20.1	0.8270
AT3G27120			P-loop containing nucleoside t...		Lus10041563 [exp]	29.5	0.8635

Compare expression of checked genes

Lus10037692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.