Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02860 180 / 3e-54 C2H2ZnF zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015686 [exp] 412 / 6e-145 AT3G02860 279 / 6e-93 zinc ion binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G135500 [exp] 221 / 5e-70 AT3G02860 177 / 5e-53 zinc ion binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037693 pacid=23167203 polypeptide=Lus10037693 locus=Lus10037693.g ID=Lus10037693.BGIv1.0 annot-version=v1.0 ATGGATAAGAAGGCGTTGTTTAGAGCTAAATTGAATGCTCAGAAGAAGGTCCAGCGAATCGATTCTCCTCTAGTCAGGTATAACGAGTCTGATCAACCGG TTTGTAGAGTATGCAATTTTCTTTTGAAGGAATCTCAGTGGGATGCTCACCAAGCTTCTCGCAAACATCGTGAGGCAATAGATAAACTCAAGGCTAATGC AGCTGCGAAGACTAATGCTACGAATTCGAAACTGGAATCTCGTTCTGAATCAACCAGAGTGGCATCCACAAAAAAAGCAGAGTTTGCTACGCAGAAAGCT GAACCACCAACAAAGTCATCAAAGCCACAGTCATCATCTGCACTTCCTCCGAACTTTTTTGATAATCATGGGCCAAAGAGCCAAAGCACTGGTGCAAACT CTGACAAAGTGGCGGATTCAGATCCACATAGAAAGTTAAATGTCTCTCTTGGACCCAAAACTACTGAGCCTCTTCCAGAGGATAAACCGGAAGCACGTCC TAGTGTCAAAGATACACATCTTCGAACTGTAGAGGTTGCTAGAGAGCATACACAGTCGCAAGATGTCAGTCACTCGGAAACCAAATCGGCGAAGGGGTCT CTCCCAGAAGGTTTCTTTGATAACCAGGAAGCTGATTTGCGTGCTCGTGGAATAAAGATTGTGAAGCCCGATGTTAAGGATGAGTACAAAGAATTTGAGA AACTGATCCAAGAAGACCTGAGGGAGGTAGACGACCGGTTAGAGGAAGAAGAGATTGATGCAGCAGAAAAGATCGAAGAAGCCGAGACTGTAGAGCAGAA GACCTACATGGAAAAGGTGGAAATGCTGAAAAGGAGGAGAATGGAGTTGGAATCTGCCAAGTCAGCGAAACGGAGTAAAGGCAGAGGAGGAGGTTCGAAG GTCACGAAGAAAGATTCCAGCGACGAAGAAGATTCGTCCAGCGATGGAGACAGCGATAGCAAAGGGAATTTCACAGTCGATTGGAGAGCTCAACATCTAT GA
AA sequence Show only first row Show all	>Lus10037693 pacid=23167203 polypeptide=Lus10037693 locus=Lus10037693.g ID=Lus10037693.BGIv1.0 annot-version=v1.0 MDKKALFRAKLNAQKKVQRIDSPLVRYNESDQPVCRVCNFLLKESQWDAHQASRKHREAIDKLKANAAAKTNATNSKLESRSESTRVASTKKAEFATQKA EPPTKSSKPQSSSALPPNFFDNHGPKSQSTGANSDKVADSDPHRKLNVSLGPKTTEPLPEDKPEARPSVKDTHLRTVEVAREHTQSQDVSHSETKSAKGS LPEGFFDNQEADLRARGIKIVKPDVKDEYKEFEKLIQEDLREVDDRLEEEEIDAAEKIEEAETVEQKTYMEKVEMLKRRRMELESAKSAKRSKGRGGGSK VTKKDSSDEEDSSSDGDSDSKGNFTVDWRAQHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10037693 [exp]	0	1
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	1.0	0.8835
AT1G20770			unknown protein		Lus10030736 [exp]	3.5	0.8338
AT4G18820			AAA-type ATPase family protein...		Lus10007316 [exp]	4.5	0.8331
AT5G08120		MPB2C, ATMBP2C,...	movement protein binding prote...		Lus10034653 [exp]	5.2	0.7989
AT3G15080			Polynucleotidyl transferase, r...		Lus10011026 [exp]	11.7	0.8443
AT1G58280			Phosphoglycerate mutase family...		Lus10032821 [exp]	11.9	0.7853
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10038185 [exp]	13.2	0.8294
AT1G50000			methyltransferases (.1.2)		Lus10035666 [exp]	15.5	0.7843
AT5G02740			Ribosomal protein S24e family ...		Lus10015045 [exp]	16.1	0.8226
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Lus10025689 [exp]	16.2	0.7946

Compare expression of checked genes

Lus10037693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.