Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34240 656 / 0 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT1G44170 617 / 0 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT3G02850 593 / 0 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 550 / 3e-180 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT4G36250 445 / 1e-144 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT2G26650 177 / 3e-45 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT2G25600 173 / 6e-44 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 169 / 2e-42 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT1G74920 148 / 2e-37 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 148 / 3e-37 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015688 [exp] 972 / 0 AT4G34240 674 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Lus10015687 [exp] 813 / 0 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10029684 [exp] 647 / 0 AT1G44170 742 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10025681 [exp] 620 / 0 AT1G44170 743 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10018153 [exp] 612 / 0 AT1G44170 734 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10042724 [exp] 509 / 1e-170 AT1G44170 605 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10041806 [exp] 421 / 2e-135 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10002557 [exp] 440 / 4e-135 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10028357 [exp] 416 / 2e-133 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G069800 [exp] 702 / 0 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.001G412900 [exp] 699 / 0 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.017G135400 [exp] 647 / 0 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G083300 [exp] 635 / 0 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.002G081800 [exp] 625 / 0 AT1G44170 731 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.005G179300 [exp] 623 / 0 AT1G44170 736 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.012G043000 [exp] 497 / 6e-160 AT3G02850 1032 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.001G259100 [exp] 449 / 4e-146 AT4G36250 556 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.007G017100 [exp] 445 / 1e-144 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.006G154600 [exp] 178 / 1e-46 AT2G26650 816 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family CL0099 [flax] [poplar] PF11834 [flax] [poplar] KHA KHA, dimerisation domain of potassium ion channel CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10037694 pacid=23167087 polypeptide=Lus10037694 locus=Lus10037694.g ID=Lus10037694.BGIv1.0 annot-version=v1.0 ATGACGATGAACGGCGACGAGAGGGCGGTGGAGAAGGTGGAAAAGGAAGAGAATGAGGCGGCGGCGAGGGAGGAGGAGGAGGAGGAGGAGGAATTTGAAC TTCAGGACGTGAGGGAGAGATTGAGGAGAGGGAGTAGATTCAATCGGATCGAAAGTGACTTTGATTTAAGTAGACACCACCGCCGCGGCGGCAGCGGTGG AGAGATCGGAAGCAGCGGAGGAGGATCCGGCCTGAGTACACGGTTCAGCCGGCAGTCTATGATCGACGGATTCCATCACGTCTCCACCGGTCTCGTCATT CATCCCGACAACAGATGGTATCGAGCATGGTCCAAATTCATACTGCTATGGGCAGTGTACTCATCATTCTTCACGCCGATGGAGTTTGGATTCTTCAGGG GATTACCTGAGAATCTCTTCATTCTGGACATTGTTGGCCAGATTGCTTTCCTTTTCGACATTGTTTTCCAGTTCTTCATCTCCTACAGAGACCCGCAAAC TTATCGTATGGTCTACAAACGCGCCCCCATAGCTCTTCGGTATTTAAAATCTCATTTCATCATCGATTTGCTCTGTTGTATGCCTTGGGACATCATCTAC AAGGTTTCTTGTTCATATCGTAACAACCTTGCTTCTTCCTTGCAGATCTCTGAAACTTTGTTCCTTCCTATCGTTGAAAAGGTTTCTCTTTTTAAAGGAT GCTCTTCGGAATTTATCAATCAGATTGCGGTTAGGCTCCATGAAGAGTTTTTTCTTCCTGGAGAAGTAATATTAGAACAAGGAAGTGTAGTGGATCAACT ATATTTTGTTTGCCAGGGTGCTCTGGAAGAGGTTGGGATGGTAGAAGATGGATCGGAAGAGACAGTCTCACTTCTATCACCAAACAGCTCGTTCGGAGAA ATCTCGATCCTCTGCAACATTCCTCAACCATATACTGTTCGAGTTTGCGAGTTATGCAGACTTCTGCGACTAGACAAACAGGCTTTCTCGGACATACTCG AGATATATTTCCACGACGGGCGCAAAATTCTGAACAACCTACTCGAGGCGAAGAAAGAACCAATCCGCGATAAGCAACTAGAATCGGACATCACGTTTCA CATAGGAAAGCAAGAAGCTGAACTTGCTTTAAGAGTGAATAGTGCAGCTTATCATGGGGATCTTATCCAACTAAAGGGCTTCATTCGCGCTGGAGCCGAT CCCAACAGAACTGATTATGATGGCAGATCACCATTGCATCTTGCCGCATCAAGGGGTTACGAAGACATGGCGAGATTCCTCATTCAAAAGGGAGTTGATG TGAACATGAAAGATAAATTCGGGAACACGCCTTTGATGGAAGCGATAAAATCCGGACACGATCGAGTTTCATCATTACTCGTCGCCAAAGGCGCCTCCTT GAACATAGAGGATGCAGGTAGCTCCCTGTGCACGGCAGTTGCAAGGGGGGACTCTGATTTCCTCAAGAGGATTCTGGCCAACGGCGTCGATCCGAACTCG AAAGACTACGATCACCGGACTCCGCTCCACGTAGCTTCCTCCGAAGGACTTTTTCTAATGGCTAAATTGCTGGTAGAAGCTGGAGCCAGTGTTTTCACAA AGGACAGATGGGGAAACACACCACTGGATGAAGGAAGGAGGTGTGGAAATAAGAACTTGATCAAGCTTTTGGAAGAGGCTAAGACTACACAGTTGGCAGA AATGCCTGATAGTAGTAGCTCTCAAGGAACCAAAGGCAACCCCAGCTTGAGGAAATGCACGGTGTTCGGGTTCGATCCATGGAGTCCAAAGGAGGAGAGG AGGGTTGGGATAGTGTTATGGGTGCCACAGTCCATTCAAGAGCTTATAGAAGCTGCCACGGAGTTGCTCGAATTTCGAGCCGAGGATGATGGTACCTGTG TGGTGACGGAAGATGGAGGCAGAGTTGTGGATGTAGATATGGTTGACGACGGTCAGAAACTATGCTCTGTAAGTGTGAAACCTGTGCTGCGGGAGGGAGA ACAGAAGAATCAGGAGCAGCAAGGGATACAAAAGGCGACATTTGGGGCAGAGGAGGCGACGTCGTTGGTTAAGAAGCTGAGGCAGAGCTTCAACTCCGGC AAGACTAAAAGTTACGAATGGAGGATTTCGCAGCTGACCAAGATTTCCAAGATGGTCGAGGAACGGGAAAACGACATCGTTTCCGCCCTCTACGACGACC TCTCCAAGCCTTCCCTTGAAGCCTTTGTTGCTGAGATTTCGATGGCGAAGTCTGCCTGTAAGGAGGCAATAGAAGGACTGAAGGACTGGATGAAGCCTGA AAGTGTACTCTTTCTTCACTCTGTTCTTCTTTCAGCTAATCAACTTGTTGATCAAATTCGAAAAGGTGAATCTCCATCCATGAAAAAACTATATATGATG CAGGTCAAAACAACCATTTCGACGTTTCCTTCTTCAGCAGAGATTGTACCAGAGCCTTTGGGGGTAGTTCTTGTCATTTCCACCTGGAATTTCCCTTTCT TGCTGTCGATCGATCCGGTGATTGCAGCCATTTCGGCAGGGAATGCCGTGGTCCTGAAACCATCGGAGATAGCTCCGGCTACATCTTCACTCTTGTCAAA GCTACTACAAGAGTACCTGGACGAGTCGGCCGTTACAGTTGTCGAGGGGGCCATCCCCGAAACCACCGCACTGTTAGAGCAGCGGTGGGACAAGATTCTT TACACAGGGAGTGCTAAAGTGGGTAGGATTGTGATGGCGGCCGCGGCGAAGCACCTCACTCCGGTTGTCCTCGAACTCGGTGGGAAATGCCCGGCCGTTG TCGATTCGAATGTCAAACTAGAGGTTGCAGTGAGGAGGATCATAGCAGGGAAATGGCAATGCAACAATGGACAGGCTTGCATTGGAGTTGATTACATCAT TACTACCAAAGATTTTGCTCCCAAGTTGATAGAGGGCCTGAAGAAAGGGATCAAAGAGTTCTTCGGGGAGGACGCTATGGAGTCGAAGGACATTTCGAGG ATCGTGAGCCTTACGCAGTTCAAACGCTTGGTGGGGCTTCTGGAAGAGGAGAATGTGTCCAACAAAATCGTCCTCGGAGGCCGAACTGATGTCGATAGAT TGAAGATATCTCCAACCATACTGCTGGATCCTCCACAGGAATCCCAAATCATGCAGGAGGAGATCTTTGGACCATTGCTCCCCATTGTCACGGTGGAGAA CTTGAGAGAGTCATTTCAAGTGATAAACTCAAAACCAAAGCCTCTAGCTGCATACTTATTCACAGATGATGAACAGCTCAAGCAGGAATTTGTGCAGAAT GTTCCTTCAGGAGGAATGTCCATCAACGACACAATCCTACATGTTACGGTGCATACGCTGCCGTTCGGAGGAGTAGGGGAGAGCGGGATGGGTTCGTACC ACGGGAAGTACTCGTTCGACGCATTTAGCCACAAGAAGTCGGTACTGTATCGAAGCTGGAGTGGAGATGCATCACTGAGGTATCCGCCTTATACTCCTGA GAAAAAATCGATGATGAAGGGACTTATGAACGGTGGCCTGCCCGGGTTGTTGTCTGCTTGGTTCGGAGGATCGTCCTCGAATGAATGA
AA sequence Show only first row Show all	>Lus10037694 pacid=23167087 polypeptide=Lus10037694 locus=Lus10037694.g ID=Lus10037694.BGIv1.0 annot-version=v1.0 MTMNGDERAVEKVEKEENEAAAREEEEEEEEFELQDVRERLRRGSRFNRIESDFDLSRHHRRGGSGGEIGSSGGGSGLSTRFSRQSMIDGFHHVSTGLVI HPDNRWYRAWSKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIVFQFFISYRDPQTYRMVYKRAPIALRYLKSHFIIDLLCCMPWDIIY KVSCSYRNNLASSLQISETLFLPIVEKVSLFKGCSSEFINQIAVRLHEEFFLPGEVILEQGSVVDQLYFVCQGALEEVGMVEDGSEETVSLLSPNSSFGE ISILCNIPQPYTVRVCELCRLLRLDKQAFSDILEIYFHDGRKILNNLLEAKKEPIRDKQLESDITFHIGKQEAELALRVNSAAYHGDLIQLKGFIRAGAD PNRTDYDGRSPLHLAASRGYEDMARFLIQKGVDVNMKDKFGNTPLMEAIKSGHDRVSSLLVAKGASLNIEDAGSSLCTAVARGDSDFLKRILANGVDPNS KDYDHRTPLHVASSEGLFLMAKLLVEAGASVFTKDRWGNTPLDEGRRCGNKNLIKLLEEAKTTQLAEMPDSSSSQGTKGNPSLRKCTVFGFDPWSPKEER RVGIVLWVPQSIQELIEAATELLEFRAEDDGTCVVTEDGGRVVDVDMVDDGQKLCSVSVKPVLREGEQKNQEQQGIQKATFGAEEATSLVKKLRQSFNSG KTKSYEWRISQLTKISKMVEERENDIVSALYDDLSKPSLEAFVAEISMAKSACKEAIEGLKDWMKPESVLFLHSVLLSANQLVDQIRKGESPSMKKLYMM QVKTTISTFPSSAEIVPEPLGVVLVISTWNFPFLLSIDPVIAAISAGNAVVLKPSEIAPATSSLLSKLLQEYLDESAVTVVEGAIPETTALLEQRWDKIL YTGSAKVGRIVMAAAAKHLTPVVLELGGKCPAVVDSNVKLEVAVRRIIAGKWQCNNGQACIGVDYIITTKDFAPKLIEGLKKGIKEFFGEDAMESKDISR IVSLTQFKRLVGLLEEENVSNKIVLGGRTDVDRLKISPTILLDPPQESQIMQEEIFGPLLPIVTVENLRESFQVINSKPKPLAAYLFTDDEQLKQEFVQN VPSGGMSINDTILHVTVHTLPFGGVGESGMGSYHGKYSFDAFSHKKSVLYRSWSGDASLRYPPYTPEKKSMMKGLMNGGLPGLLSAWFGGSSSNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10037694 [exp]	0	1
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10016075 [exp]	2.4	0.8690
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10012298 [exp]	4.5	0.8769
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10028315 [exp]	4.5	0.8510
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	7.8	0.8848
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031716 [exp]	8.7	0.8647
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10041763 [exp]	12.8	0.8656
AT1G44000			unknown protein		Lus10029738 [exp]	13.6	0.8626
AT2G20920			Protein of unknown function (D...		Lus10005055 [exp]	16.3	0.7973
AT2G20830			transferases;folic acid bindin...		Lus10018558 [exp]	16.3	0.8274
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10021224 [exp]	17.9	0.8063

Compare expression of checked genes

Lus10037694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.