Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30770 102 / 2e-28 Putative membrane lipoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015689 [exp] 212 / 1e-71 AT4G30770 100 / 2e-27 Putative membrane lipoprotein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G066500 [exp] 102 / 6e-28 AT4G30770 84 / 5e-21 Putative membrane lipoprotein (.1) Potri.007G103000 [exp] 67 / 7e-15 AT4G30770 56 / 2e-10 Putative membrane lipoprotein (.1) Potri.019G043701 [exp] 54 / 3e-09 AT5G17590 74 / 1e-16 Putative membrane lipoprotein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037695 pacid=23167004 polypeptide=Lus10037695 locus=Lus10037695.g ID=Lus10037695.BGIv1.0 annot-version=v1.0 ATGCCTGTAGACGACCCAAGCTCAGGTCAATTCTTCATATGGATCATATCGGGTTTCCTGTTCGCGTCCGTGACGGTTGGTGGGACCTTCCTGGTTATGT ATTTGATCCTCCCTCCCACCCCGTCTACTGAGTGGCTCCCCATCGTTGGAGTCTCCCTCGTTTGCCTCCCGTGGGGGTTTTGGTTCTTCACTTGCATCTA TCGGGTCGTCTCCCGTGCTTTCGGGTTTAGAATGGTTATCGGAGGCGGCGGGGGAGGAGGAGGAGGAGGCGGCGATGGTGATGATAACAATGGAAAGGGC GGCCATGGATCTCCTTCCGGAGGTACGAGATCAGAAAAAGATTTAGGACATAAAAGCGGAGAAAACGGTGATAATAACAGTATCAAGAGGACATCAAGTT CGACGAATGGCCTCCCGATTGCTTCTAAAGAGAGTGAGATGCCATTGACACAATCCATGGGATCTAAATGA
AA sequence Show only first row Show all	>Lus10037695 pacid=23167004 polypeptide=Lus10037695 locus=Lus10037695.g ID=Lus10037695.BGIv1.0 annot-version=v1.0 MPVDDPSSGQFFIWIISGFLFASVTVGGTFLVMYLILPPTPSTEWLPIVGVSLVCLPWGFWFFTCIYRVVSRAFGFRMVIGGGGGGGGGGGDGDDNNGKG GHGSPSGGTRSEKDLGHKSGENGDNNSIKRTSSSTNGLPIASKESEMPLTQSMGSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30770			Putative membrane lipoprotein ...		Lus10037695 [exp]	0	1
AT1G69990			Leucine-rich repeat protein ki...		Lus10041486 [exp]	4.8	0.8924
					Lus10021851 [exp]	6.8	0.8891
					Lus10012440 [exp]	8.3	0.8891
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	9.6	0.8891
					Lus10008791 [exp]	10.7	0.8891
					Lus10026713 [exp]	11.7	0.8890
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024619 [exp]	12.4	0.6626
					Lus10031183 [exp]	13.0	0.8802
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	14.1	0.8797
					Lus10020451 [exp]	14.7	0.8796

Compare expression of checked genes

Lus10037695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.