Plant FIBer expression Database

Lus10037697 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G39450 514 / 5e-177 F-box family protein (.1)
AT5G39460 447 / 9e-151 F-box family protein (.1)
AT5G39480 439 / 1e-147 F-box family protein (.1)
AT5G39490 234 / 3e-69 F-box family protein (.1)
AT5G39470 72 / 1e-14 F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015691
[exp]
995 / 0 AT5G39450 551 / 0.0 F-box family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G102000
[exp]
709 / 0 AT5G39450 572 / 0.0 F-box family protein (.1)
Potri.005G067300
[exp]
696 / 0 AT5G39450 568 / 0.0 F-box family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
Representative CDS sequence
>Lus10037697 pacid=23167218 polypeptide=Lus10037697 locus=Lus10037697.g ID=Lus10037697.BGIv1.0 annot-version=v1.0
ATGTCACCTGAATTCAGTGGATTGAACTTGTTCCTGGCTCTGCCAGATGACGTGTTTGCTATCATATCTCGCTCCCTATCGCCGTTGGACGTTTGCAATC
TCAGCCTTTCGTGCCGGAGCTTACGAGATTTTTCATCATCTGAGAAAGTCTGGCTCGCTCAATGTGGAATCGTTGGGGTTCTTCCCCAAACTGAACTGAT
CAAGTGGAGGAAAGGCGTTTCGTCGTACAAGTCCCTCTTCCGATTCCTTGTTACTGTTGTTAAGCCACTGGTTGGAATTTGGGTTCATCAGAACCCTGAG
CTCGGGAATGTAGTGTACGTAATGCCTGGTTTCGTATCGGTCGTTGGATGTCGAGTTATACCGCAAGAGCTTGGTCCTTTAGGGATCGAAGACGGCCCTA
TTCTCTGGTCGCCGGTTTTCGAAGTAATAAGTGATCTTGATGGTTCTTCTTTGTTCTTCCTTCATGGAAGGGAGAAAGGAACTGACTATGTGTATCCCGG
TTCGTTGAAACCGGCTGATCGGAACTGCAATGTGCTTTTGCTCGAGGTCGAACCTCGCGAGCAGAAGAAGAGACTGCTGCTGCATAGTCAGAGCTTTGCT
TGCATTTCGGATCATCAGTCGAGCAAAGTTTCGAGGTCGAGTAGTGGATTGTCAAAGTCGAACCGGCTAGTCGAGCTCAAGCCGAGTTTTAGCCGGTTGG
GGTTTAGTGGTAGGAGGAAGCTAATCGAGGCTGTGACTCGAAATGTTCATCGAGTTTTACCAGATTCAACGAGGGGACCGCTTTTTCCTTCTCTTACGAG
GAGAAGTGATGATGATGAAGATAGCTCGAGTTTGTGTCGACGTAGATCGTTGCTTCTGGAAACACACAAGCTCGGTGGCGATGACGTGGATTGGAAAACG
GTTCCCGAACTGCTTTCCGATCGCATTGTCCATGGATCCAAAAGCATAGCTCGGTCTGGTGGAAATGGAGATGGTTACACACAATCCATCGTCAAGAAAA
CCCTCGGCGGATATTTACGAGCTAGTCTAAGGCAGATTTTGGGTAAGTCGCCGCCTTTTTTTCGTGTAAACTCGAGGAGTTCTTCGAACTCTTCGAGCGG
TGAGAATAAGCACTCGAGTATTCACGATTTCTTGCTATCGGGAGATAAGATAGGATTGGTGTTACGACCCGTAAAGTTGAGGTTGTCTTCATACCGAGCG
TGGCCAAATATGCACGATAGCCGGTTCGCTCTCTACAAGTTACCTTTGTGGCATCCCCGACCTGACCAAGAGTATGCTGGTTTATGGGGTGGAACTTTTG
GGTGGCCTCCTGGAAAGGCGTCCGAGGATAAACCCGGGAAAGCTCTCTTCTTTCTGTTGTTATCTTACGACGAATCCAATGGGGTCCACCGAAATCTCGT
GGCTACAAAGATACTCGAAGGCACTCACTATGTACTCCATCCGAATGGCTCGGCGATGTTTGTAGTGAATCTAGACGAGCCTTCGGAGGACCCATTTCCC
TGGGATCCTGACTGTGTCGAAAATTCGTTTTCGGGGGATGGTATTGCGCACGGATACGGGTTCAGGTATCCCGGGTCGAAACCCGGATCACTGTTCGTGA
TTCGAAACGGTGTGCTCGCTTTCGTATGGAAAGAGTCAAGAGCTGTGCTGACGTTGCAGCGGCTGAACTTGGAGGACCTCGTGAGGAAAGGCGAACAAGT
GCCCGCGCTTACTCCCATTGCGAACTTTGCGTACTTGACAAAGTCGTACTCCAATGTGTTTGTCGGGTTCTCGAGCGGTTCGGCTTGCGCCTCTTCACCG
AGGTTCGGCTTCCTTTTCCAAACATCCTTTGTGTCTAATTAG
AA sequence
>Lus10037697 pacid=23167218 polypeptide=Lus10037697 locus=Lus10037697.g ID=Lus10037697.BGIv1.0 annot-version=v1.0
MSPEFSGLNLFLALPDDVFAIISRSLSPLDVCNLSLSCRSLRDFSSSEKVWLAQCGIVGVLPQTELIKWRKGVSSYKSLFRFLVTVVKPLVGIWVHQNPE
LGNVVYVMPGFVSVVGCRVIPQELGPLGIEDGPILWSPVFEVISDLDGSSLFFLHGREKGTDYVYPGSLKPADRNCNVLLLEVEPREQKKRLLLHSQSFA
CISDHQSSKVSRSSSGLSKSNRLVELKPSFSRLGFSGRRKLIEAVTRNVHRVLPDSTRGPLFPSLTRRSDDDEDSSSLCRRRSLLLETHKLGGDDVDWKT
VPELLSDRIVHGSKSIARSGGNGDGYTQSIVKKTLGGYLRASLRQILGKSPPFFRVNSRSSSNSSSGENKHSSIHDFLLSGDKIGLVLRPVKLRLSSYRA
WPNMHDSRFALYKLPLWHPRPDQEYAGLWGGTFGWPPGKASEDKPGKALFFLLLSYDESNGVHRNLVATKILEGTHYVLHPNGSAMFVVNLDEPSEDPFP
WDPDCVENSFSGDGIAHGYGFRYPGSKPGSLFVIRNGVLAFVWKESRAVLTLQRLNLEDLVRKGEQVPALTPIANFAYLTKSYSNVFVGFSSGSACASSP
RFGFLFQTSFVSN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G39450 F-box family protein (.1) Lus10037697
[exp]
0 1
AT5G39450 F-box family protein (.1) Lus10015691
[exp]
1.0 0.7860
AT5G66320 GATA GATA5 GATA transcription factor 5 (.... Lus10031096
[exp]
11.8 0.6640
AT3G29400 ATEXO70E1 exocyst subunit exo70 family p... Lus10035146
[exp]
11.8 0.6522
AT1G62960 ACS10 ACC synthase 10 (.1) Lus10006676
[exp]
14.8 0.7082
AT3G60070 Major facilitator superfamily ... Lus10034394
[exp]
18.0 0.6545
AT2G24820 AtTic55, TIC55-... translocon at the inner envelo... Lus10026246
[exp]
23.5 0.6907
AT4G32340 Tetratricopeptide repeat (TPR)... Lus10002013
[exp]
27.1 0.6577
AT3G09470 Major facilitator superfamily ... Lus10003979
[exp]
29.7 0.6479
AT3G04870 SPC1, PDE181, Z... SPONTANEOUS CELL DEATH 1, PIGM... Lus10009190
[exp]
31.7 0.6246
AT5G53870 AtENODL1 early nodulin-like protein 1 (... Lus10009196
[exp]
31.9 0.5881

Lus10037697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.