Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09260 258 / 1e-87 VPS20.2 vacuolar protein sorting-associated protein 20.2 (.1) AT5G63880 253 / 5e-86 VPS20.1 SNF7 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015693 [exp] 324 / 7e-114 AT5G09260 333 / 2e-117 vacuolar protein sorting-associated protein 20.2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G101500 [exp] 270 / 2e-92 AT5G09260 255 / 1e-86 vacuolar protein sorting-associated protein 20.2 (.1) Potri.005G067700 [exp] 266 / 4e-91 AT5G09260 248 / 7e-84 vacuolar protein sorting-associated protein 20.2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [flax] [poplar] PspA PF03357 [flax] [poplar] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Lus10037699 pacid=23167068 polypeptide=Lus10037699 locus=Lus10037699.g ID=Lus10037699.BGIv1.0 annot-version=v1.0 ATGGGTAACATATTCGTCAAGAAACCCAAGATCACCGATGTCGACAGAGCAATCCTGTCTCTCAAGACCCAAAGGCGCAAGCTTGGCCAATACCAGCAGC AGCTCGAAACTGTTATTGAAGCAGAGAAGCAAGCTGCCAAAGACTTGATCCGTGAGAAGAGAAAAGATAGAGCCCTGCTAGCATTGAAGAAGAAGAAGAC CCAGGAGGAATTGTTGAAGCAAGTGGATACTTGGATCATCAATGTCGAGCAGCAATTGGCGGATATCGAACTAACGAGCAAGCAAAAGGCGGTGTTTGAG AGTTTGAAAGCTGGTAATGAAGCGATCAAGGCCATACAGGGTGAAGTCAACCTGGATGATGTTCAAAAGTTGATGGATGATACAGCTGAAGCTAAGGCTT ATCAAGATGAAATCAATGCAATACTGGGAGAGAAATTGTCTGCAGAGGATGAAGAGGAGATTCTGGCTGAATTTGAAAACTTGGAAATCCAGATGACAGT TGACGATATGCCAGAAGCACCTACCGCAGTGCCATCGAAGGAAGAGGATGGAGAATTGGATCTTCCTGATGTACCAACTAAAAGACCAGTTGCTTCAGAA GAGGTTCCCAGAAAGGAAAAAGTTCTGGAGGAGCCAATGCCTGCATAA
AA sequence Show only first row Show all	>Lus10037699 pacid=23167068 polypeptide=Lus10037699 locus=Lus10037699.g ID=Lus10037699.BGIv1.0 annot-version=v1.0 MGNIFVKKPKITDVDRAILSLKTQRRKLGQYQQQLETVIEAEKQAAKDLIREKRKDRALLALKKKKTQEELLKQVDTWIINVEQQLADIELTSKQKAVFE SLKAGNEAIKAIQGEVNLDDVQKLMDDTAEAKAYQDEINAILGEKLSAEDEEEILAEFENLEIQMTVDDMPEAPTAVPSKEEDGELDLPDVPTKRPVASE EVPRKEKVLEEPMPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10037699 [exp]	0	1
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10002264 [exp]	1.4	0.9073
AT5G40370		GRXC2	glutaredoxin C2, Glutaredoxin ...		Lus10022253 [exp]	2.2	0.9001
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10037459 [exp]	2.8	0.9041
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000371 [exp]	3.6	0.8824
AT4G14600			Target SNARE coiled-coil domai...		Lus10008723 [exp]	3.7	0.8959
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10039381 [exp]	4.1	0.9093
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10024638 [exp]	5.3	0.8824
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10035184 [exp]	5.5	0.8971
AT3G45020			Ribosomal L18p/L5e family prot...		Lus10016132 [exp]	6.0	0.8841
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10015693 [exp]	6.7	0.9065

Compare expression of checked genes

Lus10037699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.