Plant FIBer expression Database

Lus10037700 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12650 194 / 3e-62 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015695
[exp]
352 / 2e-124 AT3G12650 196 / 4e-63 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G063700
[exp]
216 / 3e-69 AT3G12650 192 / 7e-60 unknown protein
Potri.001G269000
[exp]
214 / 2e-68 AT3G12650 140 / 1e-39 unknown protein
PFAM info
Representative CDS sequence
>Lus10037700 pacid=23167241 polypeptide=Lus10037700 locus=Lus10037700.g ID=Lus10037700.BGIv1.0 annot-version=v1.0
ATGGCGGCGGCCATTTTCGCCCGTAGACTCTCCTCCGCCTTCCGTAAACCCTCCCCTTCCATTTCCCCATTCTTCACAGTCCGAAACACTATAAACTCTT
CTCTCGCCTCCGATCCGATCGCCCCATTCCGATCCCCCGCCATAACGGATCATCATCCCTCCAATTTCAATCCATCCTTCCCCCGATCGTACTCCAATCT
CATCCCCAGACACTACTCCAGCAGCTCAGAATCACAACCGGACCCCCCTCCTCCGAATCAGAACCAGCCGAGTGAGTATCCGAGCAAGAACCCGGACTAC
AAGCACCAGGAGATCGAAGGCACGACAGTAGAGCGAGACCTCTCGCCTCTCGCCAACGAGACCAGAACAGTCCTCGAGCGGATGATGAAGAACATCTACA
GCCTCAGCAGAGTGATGGCTGCTGTCGGCTTGCTCCAGCTAGGGATCGGAGCTTGGATCTCTTACACTACGACAGCGATCACGGAAGTTTCTGTTCAGAG
CTGTGTGGCGTTTGGTTTCCCATTCGCGCTGGCGTTCATGCTGAGGCAGTCGGTGAAGGCGATGTACTTCTTTAAGAAGATGGAGGAGCAAGGCAGGCTT
CAGATCATGACGCTGGCGCTCCAGGTTGCAAAGAACTTGAATGTGTTCTTCGTCAGAGCTCGGATTGCTTCTGTGATGTGCATCGTTGGGATGTGTATTG
GAATGGCGTTCGCTTTCTTCCCGAAGTGA
AA sequence
>Lus10037700 pacid=23167241 polypeptide=Lus10037700 locus=Lus10037700.g ID=Lus10037700.BGIv1.0 annot-version=v1.0
MAAAIFARRLSSAFRKPSPSISPFFTVRNTINSSLASDPIAPFRSPAITDHHPSNFNPSFPRSYSNLIPRHYSSSSESQPDPPPPNQNQPSEYPSKNPDY
KHQEIEGTTVERDLSPLANETRTVLERMMKNIYSLSRVMAAVGLLQLGIGAWISYTTTAITEVSVQSCVAFGFPFALAFMLRQSVKAMYFFKKMEEQGRL
QIMTLALQVAKNLNVFFVRARIASVMCIVGMCIGMAFAFFPK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G12650 unknown protein Lus10037700
[exp]
0 1
AT3G08640 Protein of unknown function (D... Lus10003242
[exp]
2.8 0.9255
AT3G22110 PAC1 20S proteasome alpha subunit C... Lus10042145
[exp]
2.8 0.9113
AT4G29870 Oligosaccharyltransferase comp... Lus10035623
[exp]
4.5 0.9230
AT1G61790 Oligosaccharyltransferase comp... Lus10007647
[exp]
6.9 0.9193
AT2G39020 Acyl-CoA N-acyltransferases (N... Lus10023533
[exp]
8.7 0.9055
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Lus10009842
[exp]
11.2 0.9054
AT5G01410 PDX1, ATPDX1.3,... REDUCED SUGAR RESPONSE 4, ARAB... Lus10038318
[exp]
12.3 0.8941
AT1G19480 DNA glycosylase superfamily pr... Lus10010824
[exp]
13.2 0.8986
AT2G17870 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN ... Lus10005066
[exp]
13.4 0.8867
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Lus10007533
[exp]
15.0 0.8937

Lus10037700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.