Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12630 154 / 4e-48 SAP5 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) AT2G36320 98 / 3e-26 A20/AN1-like zinc finger family protein (.1) AT3G52800 94 / 1e-24 A20/AN1-like zinc finger family protein (.1) AT2G27580 92 / 8e-24 A20/AN1-like zinc finger family protein (.1.2) AT4G22820 90 / 9e-23 A20/AN1-like zinc finger family protein (.1.2) AT4G12040 89 / 2e-22 AtSAP7 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) AT1G12440 87 / 6e-22 A20/AN1-like zinc finger family protein (.1.2) AT1G51200 85 / 6e-21 A20/AN1-like zinc finger family protein (.1.2.3.4) AT4G25380 78 / 8e-19 AtSAP10, SAP10 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1) AT4G14225 77 / 2e-18 A20/AN1-like zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015697 [exp] 251 / 3e-86 AT3G12630 178 / 1e-57 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) Lus10031833 [exp] 96 / 2e-25 AT1G51200 186 / 5e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10031262 [exp] 96 / 3e-25 AT1G51200 187 / 2e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10006671 [exp] 93 / 4e-24 AT1G12440 204 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10007015 [exp] 91 / 2e-23 AT1G12440 207 / 3e-69 A20/AN1-like zinc finger family protein (.1.2) Lus10035603 [exp] 87 / 3e-22 AT2G36320 152 / 3e-48 A20/AN1-like zinc finger family protein (.1) Lus10028903 [exp] 88 / 5e-22 AT1G12440 205 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10008912 [exp] 87 / 6e-22 AT1G12440 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2) Lus10020594 [exp] 86 / 2e-21 AT2G36320 149 / 2e-46 A20/AN1-like zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G063900 [exp] 195 / 4e-64 AT3G12630 166 / 5e-53 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) Potri.001G269400 [exp] 186 / 1e-60 AT3G12630 160 / 2e-50 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) Potri.016G051700 [exp] 109 / 1e-30 AT1G51200 164 / 3e-52 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.003G205500 [exp] 108 / 3e-30 AT1G51200 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.001G018600 [exp] 107 / 8e-30 AT1G51200 203 / 2e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.006G056500 [exp] 103 / 2e-28 AT1G51200 167 / 2e-53 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.007G078500 [exp] 99 / 1e-26 AT4G12040 120 / 6e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.009G144100 [exp] 98 / 3e-26 AT2G27580 166 / 5e-53 A20/AN1-like zinc finger family protein (.1.2) Potri.004G184300 [exp] 95 / 7e-25 AT2G27580 156 / 4e-49 A20/AN1-like zinc finger family protein (.1.2) Potri.001G115000 [exp] 92 / 1e-23 AT4G12040 169 / 4e-54 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01754 [flax] [poplar] zf-A20 A20-like zinc finger PF01428 [flax] [poplar] zf-AN1 AN1-like Zinc finger
Representative CDS sequence Show only first row Show all	>Lus10037702 pacid=23167183 polypeptide=Lus10037702 locus=Lus10037702.g ID=Lus10037702.BGIv1.0 annot-version=v1.0 ATGGCCCAGAAGACGGAGAACGAGGAGATGGAGTTTAAGGTGCCGGAGACCTTGACTCTCTGTGTCAACAACTGCGGCGTCACAGGAAACCCCGCTACCA ATAACATGTGCCAGAATTGCTGCACCGCAACCACCTCCGCTGCCGCGGCCTCGGCCTCATCATCCTCTCATGAGCCGATGCCGGCGTTAACGATGACGGC TGCGGCGACGACTACTACCAAAACAAGAGTCTCTGTGGACAGATCTGCCAGATCTAGAGCAACTCGCTCTCCGACGAAAGATCCGAAGCTGCTGGTGGAC GCGATGTCGGATCGGGACAAATCCTTGGCGAGGAAGGAGGTGAATCGGTGCTGCGGGTGCAGGAGGAAGGTCGGGTTGACCGGGTTCCGCTGCAGGTGCG GAGAATTGTTCTGTTCGGAGCACCGGTACTCCGATCGCCACGACTGCAGCTACGATTACAAAACGGCCGGCCGTGAGGCCATCGCGAGGGAGAATCCCGT CGTAAAAGCAGCGAAGATCGTCAGAGTCTAA
AA sequence Show only first row Show all	>Lus10037702 pacid=23167183 polypeptide=Lus10037702 locus=Lus10037702.g ID=Lus10037702.BGIv1.0 annot-version=v1.0 MAQKTENEEMEFKVPETLTLCVNNCGVTGNPATNNMCQNCCTATTSAAAASASSSSHEPMPALTMTAAATTTTKTRVSVDRSARSRATRSPTKDPKLLVD AMSDRDKSLARKEVNRCCGCRRKVGLTGFRCRCGELFCSEHRYSDRHDCSYDYKTAGREAIARENPVVKAAKIVRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12630		SAP5	stress associated protein 5, A...		Lus10037702 [exp]	0	1
AT3G12630		SAP5	stress associated protein 5, A...		Lus10015697 [exp]	1.0	0.9458
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10006747 [exp]	1.4	0.8939
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10007654 [exp]	7.7	0.8515
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000012 [exp]	8.2	0.8518
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000011 [exp]	9.6	0.8518
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10030079 [exp]	10.1	0.8453
AT5G19080			RING/U-box superfamily protein...		Lus10034030 [exp]	10.5	0.7935
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10011006 [exp]	14.7	0.8387
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10029820 [exp]	15.2	0.8434
AT1G17100			SOUL heme-binding family prote...		Lus10042093 [exp]	15.7	0.8252

Compare expression of checked genes

Lus10037702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.