Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52115 308 / 2e-97 AtCOM1, ATGR1 gamma response gene 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015699 [exp] 902 / 0 AT3G52115 334 / 5e-107 gamma response gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G269700 [exp] 433 / 3e-145 AT3G52115 353 / 7e-114 gamma response gene 1 (.1) Potri.009G064200 [exp] 400 / 3e-132 AT3G52115 367 / 3e-119 gamma response gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08573 [flax] [poplar] SAE2 DNA repair protein endonuclease SAE2/CtIP C-terminus
Representative CDS sequence Show only first row Show all	>Lus10037704 pacid=23167225 polypeptide=Lus10037704 locus=Lus10037704.g ID=Lus10037704.BGIv1.0 annot-version=v1.0 ATGGATCAATTGCCGCCTAAAGACGGACGTCTGGTGGATAATGACGACGTGAAGTACGTCTCTAGGCTGAGTACCATCCTAGTTGCTACGATTGAAGAAG CGAAGGATAGGATCTCTCAGATCGAGTACATATTCTGCAATCAGCTCTACCCTAACGTTCAATCCAAGTACAAGAACTCGCAGGAGGTTTATCTCGAGGC TAAAAAACAGGTAGAAGAGGGGTGGAAAGAGAAGGAAAGCGATCTTCTGCTTCGAATCGAGAAGCTCGAGCGTGAGAAGCAGGTAGTTGATGTTGAGAAT CAGTCTCTAAAGCTTGAGAAGGAGAAGTTATCGGCAGAATTGAAAGAGATGACGAAATCGGTTGCTGAATTGGGGAGCGAACAGGGGAGAATCAGTTTGT TGGAGGAGAAATTGGACAGCAAGTCTAAGGAAGTTGACGAGGGAGTTGAAATGAGCAATCGGTTGATCCGGATGGTTCAGACGAAGTCGAGTAAGATAGT GGAACAGTCACAGCAGATTAAAGAGTATGAAGAGAAGAGTAATGCGTTGGTGAAGAAAGTGGAAGGTTTAGAGGAGAAGGTTGAGAGTCTGACGAGGGCG AAAGAAAGTGGGGGTTTGAAGTCAACAGTACTCAATGAGGAGAAGTTGGCTGAAGCTGAAAGGGAGAAGATGAAGCTTAAAGAACAATTGATGTGTACGG AAGAGATGATTGATGCACTTGAAAGGAATCTCAAGGACAAGACACGAGAACTGGAGCAGCTTGATGAAAGGATTACACGGAAATTCATAGTTCAAGTGAG GGACTTAGAGGAGAAGGTAAAGGAGCTGGAGAGCAATACTAATGGTACCAAAGTTGAAGAGTTACTTAACCAAGTTCAGGCCAGAGATACTGAACTACTT GACGAGAAAGAAAAGAAACGGGATCTTATTAATGCATACAAAAGTTTGAAATCTCAGTACAATTATCTGCTAGAGAAATGTGGTCTTATAACAGAGAACA TGGTTCTTCAAACTAAATTGAAAGATGGTGATGATTCAGTCAAGCATCACAAGAGTCCAGTGACATCCCCTGATCTCAAGGGATCAGACTATTCCACATT TCCTCTCAAGGTAAAGACAGAGAAGGTAGAATACGGTTTCAACGATGGGTTGATTACTAACAGTGTAAGGAAACCGGTTCCAAAATCAAGATTCTGGCTT CCTCCTCATCCTCCAACTGTAAAACCCGCCTCAATCAGTGGAGTAAAAAGACCAGCCTCTGCTGGATGGATAGAAACCAGACCTGGCCAGTCCAAACGTG GGTCCGACCCTCATGATGATTTCCTCAGTACTCCATTAGAAGCCCTCAGAGCAAACAACTTGAGCAAAGCCATCACGGAAGAGGAAGAAGCAAAAGATGT TGGCTTTCCAGCGGAGGTAAATCCAAACCCTCCGCCTGACACGGCAGACGAGGAAACGCAGAACATGAACGTGGCTGAGGAGGAGGCGCCAGGTAAGAAG GGTTTCAAGTACGTTGAAACAGTTAGAAAGAAAGCGGAGCGGGAGAATCTGAAAGGGGTTGAGTGTAAGCAATGCAAGAAATTCTACAATGCAGTTCTTC CAGACGACGAAGGAGGAGGTAATAAAAATCAAAATCTAAGATGTGAGCATCACGAGGGTGTTTCTAGGCATCGATACAGGTACGCACCTCCTTCCACTCC TGAAGGGTTTTGGAACATTGGGTTTGAATCAGAAATGTGA
AA sequence Show only first row Show all	>Lus10037704 pacid=23167225 polypeptide=Lus10037704 locus=Lus10037704.g ID=Lus10037704.BGIv1.0 annot-version=v1.0 MDQLPPKDGRLVDNDDVKYVSRLSTILVATIEEAKDRISQIEYIFCNQLYPNVQSKYKNSQEVYLEAKKQVEEGWKEKESDLLLRIEKLEREKQVVDVEN QSLKLEKEKLSAELKEMTKSVAELGSEQGRISLLEEKLDSKSKEVDEGVEMSNRLIRMVQTKSSKIVEQSQQIKEYEEKSNALVKKVEGLEEKVESLTRA KESGGLKSTVLNEEKLAEAEREKMKLKEQLMCTEEMIDALERNLKDKTRELEQLDERITRKFIVQVRDLEEKVKELESNTNGTKVEELLNQVQARDTELL DEKEKKRDLINAYKSLKSQYNYLLEKCGLITENMVLQTKLKDGDDSVKHHKSPVTSPDLKGSDYSTFPLKVKTEKVEYGFNDGLITNSVRKPVPKSRFWL PPHPPTVKPASISGVKRPASAGWIETRPGQSKRGSDPHDDFLSTPLEALRANNLSKAITEEEEAKDVGFPAEVNPNPPPDTADEETQNMNVAEEEAPGKK GFKYVETVRKKAERENLKGVECKQCKKFYNAVLPDDEGGGNKNQNLRCEHHEGVSRHRYRYAPPSTPEGFWNIGFESEM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52115		AtCOM1, ATGR1	gamma response gene 1 (.1)		Lus10037704 [exp]	0	1
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	96.0	0.7057
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Lus10026901 [exp]	99.8	0.6897
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10029537 [exp]	196.2	0.6694
AT3G51980			ARM repeat superfamily protein...		Lus10038535 [exp]	249.0	0.6638

Compare expression of checked genes

Lus10037704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.