Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12610 437 / 1e-153 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G20820 432 / 9e-152 Leucine-rich repeat (LRR) family protein (.1) AT5G12940 404 / 2e-140 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 184 / 1e-53 Leucine-rich repeat (LRR) family protein (.1) AT5G23400 168 / 8e-47 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 162 / 2e-45 Leucine-rich repeat (LRR) family protein (.1) AT1G33590 161 / 5e-45 Leucine-rich repeat (LRR) family protein (.1) AT4G08850 162 / 6e-44 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT3G11010 161 / 1e-43 AtRLP34 receptor like protein 34 (.1) AT1G33670 156 / 2e-43 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010949 [exp] 540 / 0 AT3G20820 440 / 8e-155 Leucine-rich repeat (LRR) family protein (.1) Lus10031377 [exp] 532 / 0 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10015700 [exp] 525 / 0 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10031824 [exp] 442 / 7e-156 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002551 [exp] 398 / 6e-138 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10031254 [exp] 228 / 3e-74 AT3G20820 269 / 2e-90 Leucine-rich repeat (LRR) family protein (.1) Lus10023824 [exp] 169 / 3e-49 AT5G06860 366 / 1e-126 polygalacturonase inhibiting protein 1 (.1) Lus10021028 [exp] 163 / 6e-47 AT5G06860 362 / 2e-125 polygalacturonase inhibiting protein 1 (.1) Lus10005017 [exp] 165 / 6e-45 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G064300 [exp] 523 / 0 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 521 / 0 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.003G207000 [exp] 426 / 4e-149 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.001G017500 [exp] 425 / 4e-149 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 187 / 6e-54 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016700 [exp] 178 / 2e-50 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.010G040200 [exp] 167 / 4e-46 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.016G049600 [exp] 159 / 7e-46 AT5G06860 354 / 3e-122 polygalacturonase inhibiting protein 1 (.1) Potri.019G120733 [exp] 165 / 6e-45 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 165 / 6e-45 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037705 pacid=23167276 polypeptide=Lus10037705 locus=Lus10037705.g ID=Lus10037705.BGIv1.0 annot-version=v1.0 ATGGCACCGCCGCCACGGAAGCTCGCTCCCTCCCTCCTTCTCATAGCCACATTACTAACTTTCGCCGCCGCCTGTCCGCCGGCTGACTTGAAAGCGCTCC AAACCTTCAAATCCTCATTAACCGACCCTTACCTAGGCCTCTTCAACACATGGACGGGCTCCAACTGCTCCTCCTACTACGGCGTCAGCTGCGACCCTTC CACTGGCCGAGTCGTCGACATCAACCTCCGCGGCGAGTCAGAAGACCCCATCTTCTCCAAAGCCGGCCGTACTTCCGGCTACATGACCGGCACAATCTCC CCCGCCGTCTGTAACCTCGACCTCCTCACCACGCTCATCATCGCCGACTGGAAGGCCGTCTCCGGTCCAATCCCGGCCTGCGTCTCCTCCCTCACCAACC TCCGCGTCCTCGACCTCGTCGGAAACTCCTTATCCGGCCAGATCCCTCCCCAAATCGGAAACTTAAACCGCCTCGCCGTCCTCAACCTCGCCGACAACCA GATCTCCGGCCAAATCCCTACTTCCTTCTCAAAACTGCAGAATCTTAGACACCTCGACTTGAGCGGGAACCAAATCTCCGGCCAGATCCCGTCCGATTTC GGGAATTTGAAAATGGTGAGCAGAGCTCTGCTTAACCGGAACCAGCTCTCCGGTTCGATTCCCGACTCAATTTCGAAAATGTCCAGGCTGGCGGATTTGG ATCTCTCCACCAACCGCTTATCCGGTTCGCTACCCAGTTGGTTCGGCGACTTACCGGTTTTATCCACGCTGAATCTGGACAGTAACCAGATCGGCGGCGT GATTCCGACGAAGCTGCTGGGGAGTAAAGGATTGGGGATACTGAATTTGAGCAGGAACGCTTTGGAAGGGAGCATACCGGACGTTTTCGGGCCGAAGAGC TACTTCATGGTGTTGGATTTGTCGTACAACAATCTGAAGGGAAGTATTCCGAGGACGCTTTCGTCGGCGGCGTATGTCGGCCATGTGGATTTGAGCCATA ACCATTTGTGCGGGCCGATTCCGGTAGGGGAGCCGTTCGAGCGGCTGGATACGTCGTCGTTTAGCTTCAACGATTGTTTGTGCGGGAATCCTCTCAGGAC CTGTTAA
AA sequence Show only first row Show all	>Lus10037705 pacid=23167276 polypeptide=Lus10037705 locus=Lus10037705.g ID=Lus10037705.BGIv1.0 annot-version=v1.0 MAPPPRKLAPSLLLIATLLTFAAACPPADLKALQTFKSSLTDPYLGLFNTWTGSNCSSYYGVSCDPSTGRVVDINLRGESEDPIFSKAGRTSGYMTGTIS PAVCNLDLLTTLIIADWKAVSGPIPACVSSLTNLRVLDLVGNSLSGQIPPQIGNLNRLAVLNLADNQISGQIPTSFSKLQNLRHLDLSGNQISGQIPSDF GNLKMVSRALLNRNQLSGSIPDSISKMSRLADLDLSTNRLSGSLPSWFGDLPVLSTLNLDSNQIGGVIPTKLLGSKGLGILNLSRNALEGSIPDVFGPKS YFMVLDLSYNNLKGSIPRTLSSAAYVGHVDLSHNHLCGPIPVGEPFERLDTSSFSFNDCLCGNPLRTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10037705 [exp]	0	1
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10027467 [exp]	1.4	0.9311
AT5G53880			unknown protein		Lus10000796 [exp]	3.0	0.8942
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10020121 [exp]	3.7	0.8764
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10039222 [exp]	4.9	0.9253
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10002193 [exp]	7.2	0.8492
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	7.2	0.8837
AT2G20875		EPF1	epidermal patterning factor 1 ...		Lus10018576 [exp]	9.4	0.8733
AT3G18050			unknown protein		Lus10038961 [exp]	10.4	0.8202
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006610 [exp]	11.2	0.8720
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10015700 [exp]	11.8	0.8718

Compare expression of checked genes

Lus10037705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.