Plant FIBer expression Database

Lus10037706 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06780 50 / 2e-07 glycine-rich protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016828
[exp]
139 / 8e-41 AT3G06780 62 / 1e-11 glycine-rich protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G006600
[exp]
82 / 5e-19 AT3G06780 61 / 2e-11 glycine-rich protein (.1)
Potri.008G211000
[exp]
76 / 8e-17 AT3G06780 61 / 1e-11 glycine-rich protein (.1)
PFAM info
Representative CDS sequence
>Lus10037706 pacid=23167027 polypeptide=Lus10037706 locus=Lus10037706.g ID=Lus10037706.BGIv1.0 annot-version=v1.0
ATGGCAGTCGGTTTGTCCATCGTCACTGATGCAGCCACGGCTTTGGCGAACGAACAGGGGCTAGGGTTTGGGATTGGGAATTTGGCTCTTCCGCGCCTGA
GATTTCTCTCGATCAACAACCTTATGGCCTCCGATTCCGCAACCGATCAGCTCGCCCACTGTCGCCAAAGCTCGGCGATTATCTTGGACGTGGTGGCGCC
ACCACCCGTCAAGCCAGACAACGTGGTGGCGCCACCACCCGTCAAGCCAGACAGATTTCGATCTGCTAGGCGGACGCTTACCCGTAAAAGGCGACGTACT
AGGCGGAGATCCTCAACTGATGGTGGAGACTCGGGTGACTTCGACGGAGAGTACGGGATTTTCGGCGGGGACGATGGAGGCAACGGACCGTTTGGATTCG
GCGGCGGTGGAGGGAATTGGGGGAGCGGAGGCGGAGGCGGGTGGAATTTCGGCAGATTCGGGGAGCAAAATTGGGATGAATCATCATCGTCTTCGTGGTG
GTCGGCTTCTGGGTTTGCTTATGGATTCATCTACGAGGTGATATATTGGATTGCACTGTCTAACTGTGTACACTTCGCGTTCAAGAAGGTTGCTAAGATC
ATGGTGGGTAGGATTGATGATAGTGGGAATAGCGCCAAGGTTCGAATGAGACTGGCTTCCATTTCCGTTTACTAA
AA sequence
>Lus10037706 pacid=23167027 polypeptide=Lus10037706 locus=Lus10037706.g ID=Lus10037706.BGIv1.0 annot-version=v1.0
MAVGLSIVTDAATALANEQGLGFGIGNLALPRLRFLSINNLMASDSATDQLAHCRQSSAIILDVVAPPPVKPDNVVAPPPVKPDRFRSARRTLTRKRRRT
RRRSSTDGGDSGDFDGEYGIFGGDDGGNGPFGFGGGGGNWGSGGGGGWNFGRFGEQNWDESSSSSWWSASGFAYGFIYEVIYWIALSNCVHFAFKKVAKI
MVGRIDDSGNSAKVRMRLASISVY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G06780 glycine-rich protein (.1) Lus10037706
[exp]
0 1
AT1G70000 MYB myb-like transcription factor ... Lus10010733
[exp]
1.4 0.9201
AT3G27250 unknown protein Lus10032077
[exp]
1.4 0.9229
AT1G54115 ATCCX4 cation calcium exchanger 4 (.1... Lus10015668
[exp]
1.7 0.9174
AT1G03350 BSD domain-containing protein ... Lus10042670
[exp]
2.4 0.8976
AT1G64140 unknown protein Lus10024712
[exp]
3.5 0.9156
AT5G49610 F-box family protein (.1) Lus10017086
[exp]
4.9 0.8794
AT3G06780 glycine-rich protein (.1) Lus10016828
[exp]
5.2 0.8904
Lus10010972
[exp]
5.9 0.8956
AT1G64140 unknown protein Lus10032329
[exp]
6.0 0.8697
AT3G48560 TZP5, IMR1, ALS... TRIAZOLOPYRIMIDINE RESISTANT 5... Lus10035359
[exp]
7.2 0.8780

Lus10037706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.