Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16780 311 / 1e-105 Ribosomal protein L19e family protein (.1) AT4G02230 294 / 1e-98 Ribosomal protein L19e family protein (.1) AT1G02780 292 / 7e-98 EMB2386 embryo defective 2386, Ribosomal protein L19e family protein (.1) AT4G16030 72 / 2e-15 Ribosomal protein L19e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016829 [exp] 337 / 1e-115 AT3G16780 363 / 2e-129 Ribosomal protein L19e family protein (.1) Lus10038417 [exp] 304 / 2e-102 AT3G16780 348 / 9e-124 Ribosomal protein L19e family protein (.1) Lus10038418 [exp] 297 / 7e-99 AT3G16780 337 / 3e-118 Ribosomal protein L19e family protein (.1) Lus10023387 [exp] 305 / 1e-98 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1) Lus10023388 [exp] 279 / 5e-93 AT3G16780 324 / 2e-114 Ribosomal protein L19e family protein (.1) Lus10038569 [exp] 94 / 1e-22 ND / Lus10030083 [exp] 86 / 1e-19 ND / Lus10029801 [exp] 78 / 3e-16 ND / Lus10005217 [exp] 78 / 4e-15 AT3G20660 221 / 2e-76 organic cation/carnitine transporter4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G140800 [exp] 315 / 5e-107 AT3G16780 315 / 2e-110 Ribosomal protein L19e family protein (.1) Potri.004G078000 [exp] 313 / 3e-106 AT1G02780 309 / 4e-108 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.012G037500 [exp] 308 / 5e-104 AT1G02780 317 / 2e-111 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.015G029500 [exp] 308 / 6e-104 AT3G16780 309 / 5e-108 Ribosomal protein L19e family protein (.1) Potri.015G037100 [exp] 215 / 5e-68 AT1G02780 201 / 5e-66 embryo defective 2386, Ribosomal protein L19e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01280 [flax] [poplar] Ribosomal_L19e Ribosomal protein L19e
Representative CDS sequence Show only first row Show all	>Lus10037707 pacid=23167134 polypeptide=Lus10037707 locus=Lus10037707.g ID=Lus10037707.BGIv1.0 annot-version=v1.0 ATGGTGTCGTTGAAACTCCAGAAGCGGCTTGCCGCCAGCGTGCTGAAGTGCGGGAAGGGAAAGGTCTGGCTTGATCCCAATGAGTGCAACGAACTCTCGA TGGCCAACTCCAGAACAATGGAACAATTTCGTAGCAGTACTTATGGGATATGCTTGTTGATTTATCGTTGCATAACTGGAAACTCGTCTGATAAAAAATT TGCCAACTCAATAGGGCAAAACATCAGGAAGCTGATTAGCGATGGGTTCATCATCAGGAAGCCGACCAATATCCATTCGAGGTCTCGTGCCCGAAGGATG AATGAGGCCAAGAGAAAGGGTCGCCACTCTGGATATGGTAAAAGGAAGGGTACAAGGGAGGCTAGGTTGCCGACCAAGATCCTGTGGATGAGGAGGATGC GAGTCCTGAGGCGTCTTCTGCGCAAGTACCGTGAAGCCAAGAAGATTGACAGGCATATGTACCATGATATGTACATGAAGGTGAAAGGTAATGTGTTCAA GAACAAGCGTGTACTTATGGAGAGCATTCACAAGACCAAGGCTGAAAAGGCAAGAGAGAAGACACTGTCTGATCAGTTTGAAGCTAAGCGTGTAAAGAAC AAGGCCAGCAGGGAGAGGAAGTTGGCAAGAAGAGAAGAGCGTTTTGCACAAGGACCTGGGGGGGAGAAGGTTTCACAACCTGCATCTGCACCTCAACCGG CCGATTCTATGAAGAACATTAGATTCTATGCTTCCTTGAACCGGCCGACTATGCGTCGGTCATTGGCTTGCAAGTGGCTGGCTTTTTGGTTTGCAATTGT TGTAGGCAAGATTGGGCCCTCAAGTCGAATTCGACACGGAGTGCTGTCGATCCCGCAGGAAATTATTGATACTGGAATCAAGAAGTTGAGAGCGGCGTTG GTCGCTCAATTCGTGGGATCAGTTCCTCCGATGCGTGTCTTCTCAGCCATGATCAATCGGCTTTGGGGATATGAAGGAGAGAAAGTAAACTGCCCTGAAA TGGTGTCTATTAGGCTTGAAGGTGAGATTATCAGAATTCAAGTTGAGTTGCATCAAACTCGTCAATATAAGCAATCTCAGGTCAAGGAGGTTAGACAAGA ATGGAAGCGGAAGTCCCAGCCAACTGTTGAGTTGGAGGCTACAAGCTCTGGAGGCAATGAAACTGAATCTTCTAAGGGAGAGGAGGTTCCACCTCTAACT AGTAGCTCTCCAACGGCTGGAGGGAGGGAAGAAGGTCACACTAAGACTCCTACTGGAGTGGAGGTGCTGCCATCTTCTCAACAAGTTGAAGTCCTCAAAC CTTTTGCAAGAGGAGAGCACTTCCTTGAGCCCTAA
AA sequence Show only first row Show all	>Lus10037707 pacid=23167134 polypeptide=Lus10037707 locus=Lus10037707.g ID=Lus10037707.BGIv1.0 annot-version=v1.0 MVSLKLQKRLAASVLKCGKGKVWLDPNECNELSMANSRTMEQFRSSTYGICLLIYRCITGNSSDKKFANSIGQNIRKLISDGFIIRKPTNIHSRSRARRM NEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKTKAEKAREKTLSDQFEAKRVKN KASRERKLARREERFAQGPGGEKVSQPASAPQPADSMKNIRFYASLNRPTMRRSLACKWLAFWFAIVVGKIGPSSRIRHGVLSIPQEIIDTGIKKLRAAL VAQFVGSVPPMRVFSAMINRLWGYEGEKVNCPEMVSIRLEGEIIRIQVELHQTRQYKQSQVKEVRQEWKRKSQPTVELEATSSGGNETESSKGEEVPPLT SSSPTAGGREEGHTKTPTGVEVLPSSQQVEVLKPFARGEHFLEP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16780			Ribosomal protein L19e family ...		Lus10037707 [exp]	0	1
AT3G16780			Ribosomal protein L19e family ...		Lus10016829 [exp]	1.0	0.9488
AT3G53740			Ribosomal protein L36e family ...		Lus10016466 [exp]	2.0	0.9357
AT5G57290			60S acidic ribosomal protein f...		Lus10012714 [exp]	2.8	0.9421
AT3G16780			Ribosomal protein L19e family ...		Lus10038417 [exp]	4.2	0.9415
AT1G70190			Ribosomal protein L7/L12, olig...		Lus10038367 [exp]	9.4	0.9168
AT1G07770		RPS15A	ribosomal protein S15A (.1.2)		Lus10043001 [exp]	9.5	0.9298
AT5G24510			60S acidic ribosomal protein f...		Lus10028876 [exp]	9.7	0.9313
AT1G13690		ATE1	ATPase E1 (.1)		Lus10004641 [exp]	11.0	0.9265
					Lus10038397 [exp]	15.4	0.8633
AT5G23535			KOW domain-containing protein ...		Lus10006905 [exp]	16.2	0.8244

Compare expression of checked genes

Lus10037707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.