Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16785 885 / 0 PLDZ1, PLDZETA1, PLDP1 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) AT3G05630 729 / 0 PLDP2, PDLZ2, PLDZETA2 PHOSPHOLIPASE D ZETA 2, phospholipase D P2 (.1) AT5G25370 80 / 5e-15 PLDALPHA3 phospholipase D alpha 3 (.1) AT4G00240 76 / 9e-14 PLDBETA2 phospholipase D beta 2 (.1) AT2G42010 76 / 1e-13 PLDBETA1 phospholipase D beta 1 (.1) AT4G35790 75 / 1e-13 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT1G52570 74 / 3e-13 PLDALPHA2 phospholipase D alpha 2 (.1) AT4G11830 72 / 2e-12 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G11840 72 / 2e-12 PLDGAMMA3 phospholipase D gamma 3 (.1) AT1G55180 72 / 2e-12 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016830 [exp] 1229 / 0 AT3G16785 1586 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10029873 [exp] 874 / 0 AT3G16785 1199 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10020672 [exp] 777 / 0 AT3G05630 1393 / 0.0 PHOSPHOLIPASE D ZETA 2, phospholipase D P2 (.1) Lus10041787 [exp] 78 / 2e-14 AT1G52570 1087 / 0.0 phospholipase D alpha 2 (.1) Lus10005627 [exp] 78 / 2e-14 AT4G35790 969 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10026375 [exp] 76 / 8e-14 AT2G42010 1154 / 0.0 phospholipase D beta 1 (.1) Lus10012699 [exp] 76 / 1e-13 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10036361 [exp] 76 / 1e-13 AT1G55180 968 / 0.0 phospholipase D alpha 4 (.1) Lus10014146 [exp] 75 / 2e-13 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G006300 [exp] 986 / 0 AT3G16785 1607 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.008G211100 [exp] 982 / 0 AT3G16785 1622 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.013G012300 [exp] 819 / 0 AT3G16785 1437 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.002G016100 [exp] 83 / 7e-16 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 80 / 7e-15 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 79 / 1e-14 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G112100 [exp] 79 / 2e-14 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.003G037700 [exp] 78 / 2e-14 AT1G55180 1031 / 0.0 phospholipase D alpha 4 (.1) Potri.007G060300 [exp] 76 / 7e-14 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G152100 [exp] 74 / 3e-13 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif
Representative CDS sequence Show only first row Show all	>Lus10037708 pacid=23167236 polypeptide=Lus10037708 locus=Lus10037708.g ID=Lus10037708.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCTCAGCAGTTTATGGACGGTATTGGTCGTGGTGGTGGAGGTGGAGGACCTCGATACGTCCAAATGCACACCGATTCTCCGCCGTCGGCTC CGCCGGCGATGTCGTCGTCTTTCTTCTCGTTCCAAGGTCCTGTCCCCGAGCAGTCGCGGATTTTCGAGGAGTTGCCTAGTGCAATGATCGTTCACGTCTC TCGCCCTGATGCCGGTGATATCAGCCCCGTTCTCCTCTCTTACACCGTCGAGTTTCAGTACAAACAGGCACGCACATTCAAGTGGAAATTGGAGAAGACG GCTGCACAAGTGTTCTACCTACATTTTGCTTTGAAGAAACGTGCATTCTTTGAGGAACTTCAGGGGAAGCAGGAACAGGTTAAAGACTGGCTTCAAAACC TGGGAATAGGGGAGAATGCGCAAGCAGTAGAAGATGAGGATGATGACGCAGTACATGTACAACATCAGGATGAAAGTGCTAAGAACAGAGATGTCCCCTC GAGTGCTGCATTACCTGTGTTTCGTCCATTGGGGAGGCAGCAGTCAATGTCAGATAGAGCCAAGGTTGCAATGCAACAGTATCTGAACCATTTTATGGGG AATTTGGATATTGTCAACTCCCGAGAGGTTTGTAAATTTTTAGAGGTTTCTAAGTTATCCTTTTGCCATGAATATGGACCTAAGCTCAAAGAAGATTACA TTATGGTAAAGCATCTGCCAAACATCCCAACAGTTGATGACAACAGGAAATGTTGCTCTTGCAGTTGGTTTGGCTGCTGTAATGACAACTGGCAGAAGGT GTGGGCTGTCCTAAAGCCTGGATTCTTAGCCGTACTTGCTGATCCTTTTGATGCAAAGCCGTTGGATATAATTGTTTTTGATGTCCTACCAGCCTCTGAT GGAGATGGAGATGGACGAGTTTCACTTGCAACAGAAATGAAGGAACGAAATCCCTTGCGGCATACATTTAAGGAAGTGTATGTTGGCTTATTGAAATTTT TCTGGCAGATATTTATTTGTGGCTGGTGGCTTTGCCCTGAACTTTATCTACGACGGCCATTTCAAAACTATGCATCTTCTAGGCTTGATGCTTTGCTGGA GGCCAAAGCTAAGCAGGGCGTTCAGATATACATTCTTCTCTACAAGGAAGTTGCTCTTGCTCTCAAAATCAACAGTGTTTATAGCAAGAAAAAACTTCTT AGCATTCATGAGAATGTACGTGTGCTGCGCTATCCTGACCACTTTTCTTGTGGGCTTGTCATTATTGATCACCACATTTGTTTTATTGGAGGATTGGATT TGTGTTTTGGTCGTTATGATACAACTGAACATAAAGTGGGTGACTGCCCCCCGCTAATATGGCCCGGAAAAGATTATTATAACCCAAGGGAATCTGAACC AAATTCCTGGGAAGATACAATGAAAGATGAATTGGATCGTACAAAGTATCCTCGAATGCCTTGGCATGATGTCCACTGTGCCTTATGGGGGCCACCTTGC CGTGATATAGCTAGGCACTTCGTTCAACGGTGGAACCATGCCAAGAGAAATAAAGCTCCATATGAGGAAGCAATTCCACTGCTTATGCCTCAACAGCACA TGGTTATTCCACATTATATGGGGAACTCATCTCCCATGGAGATCAAGAGCAAAAATATAGACAGTAATGGTAAAACCCAAATGCAAGATTCTTCATCTAG ATCATCTTTCCAAGATATCCCATTGCTTTTACCTCAAGAAGCTGAGGAACTTGATGGTTCTACTGGTGGCCCAAAGTCTAATGGAGTTGATGGTACAACT GGTAGAGCCTCGAATTCATTAAGGAAAGCTAAGGTAGCACCATTAGCTCCAGAAATGCCAATGAAAAGTTTTGTAGATGACCGTGACTCTTCGGATGTCT ATGGGAAAATATCTCCGGATTGGACACAACCTGGTATGAGGTCTTCTGATTTGGAGTGGTGGGAAACTCAGGAGAGAGGCGACCAGATTGGTTCCAGTGA TGAAACAGGGGAAGTTGGCCCACGGGCATCTTGCCAGTGTCAGATTCTGAGGAGTGTAAGTCAGTGGTCTGCCGGAACAAGCCAAACTGAAGATAGTATT CACAATGCTTACTGTTCACTTATTGAGAAAGCAGAACATTTTATCTACATCGAGGGTGGTCTGGATGATGCTGGTGCTGCATCTGTCAGAGCCATAATGC ACTGGCAGCATCGAACTATTTGCAAGGGACAGCATTCAGTGTTGCATAATCTTTACGAGCTTCTTGGCCCTAGGGTACAGGATTACATTTCGTTCTACGG CCTTAGATCTCATGGTCAGGTTTCAGGCGGTGGCCCGATGGCTACTAGTCAGGTATACGTTCACAGTAAAATCATGATCATTGATGACCAAACAACTTTG ATTGGATCCGCTAATATCAACGACAGAAGTCTTCTTGGTTCCCGAGATTCAGAGATCGCAGTACTTATCGAGGACAAGGAGTTAGTTGACTCCTCAATGG GTGGGAAGCCATGGAAGGCTGGTAAATTTTCTCTGAGTCTTCGAGTCGCACTTTGGTCGGAACACCTCGGTCTTCGCCCTGGTGGAGAGATGAACACTAC TATATACCAGGAGGTGTTCTCTTGCATACCAAACGATCTAATCCATTCCAGAGCTGCACTCCGGCAGAGCTTAGCTTCGTGGAAGGAGAAGCTGGGCCAC ACAACGATCGACCTGGGGATAGCACCCGAGACGGTCGAATTGTACTTGAAAGGAGACATCAAAGGCTCGAGTCCATCGGAGAGACTGGAAGCCGTGAAGG GGCACCTGGTTTCTTTCCCATTGGATTTCATGTGCAAGGAAGACTTAAGACCCATGTTCAGCGAGAGCGAGTATTATGCATCTCATGTTTTCCATTGA
AA sequence Show only first row Show all	>Lus10037708 pacid=23167236 polypeptide=Lus10037708 locus=Lus10037708.g ID=Lus10037708.BGIv1.0 annot-version=v1.0 MASSQQFMDGIGRGGGGGGPRYVQMHTDSPPSAPPAMSSSFFSFQGPVPEQSRIFEELPSAMIVHVSRPDAGDISPVLLSYTVEFQYKQARTFKWKLEKT AAQVFYLHFALKKRAFFEELQGKQEQVKDWLQNLGIGENAQAVEDEDDDAVHVQHQDESAKNRDVPSSAALPVFRPLGRQQSMSDRAKVAMQQYLNHFMG NLDIVNSREVCKFLEVSKLSFCHEYGPKLKEDYIMVKHLPNIPTVDDNRKCCSCSWFGCCNDNWQKVWAVLKPGFLAVLADPFDAKPLDIIVFDVLPASD GDGDGRVSLATEMKERNPLRHTFKEVYVGLLKFFWQIFICGWWLCPELYLRRPFQNYASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSKKKLL SIHENVRVLRYPDHFSCGLVIIDHHICFIGGLDLCFGRYDTTEHKVGDCPPLIWPGKDYYNPRESEPNSWEDTMKDELDRTKYPRMPWHDVHCALWGPPC RDIARHFVQRWNHAKRNKAPYEEAIPLLMPQQHMVIPHYMGNSSPMEIKSKNIDSNGKTQMQDSSSRSSFQDIPLLLPQEAEELDGSTGGPKSNGVDGTT GRASNSLRKAKVAPLAPEMPMKSFVDDRDSSDVYGKISPDWTQPGMRSSDLEWWETQERGDQIGSSDETGEVGPRASCQCQILRSVSQWSAGTSQTEDSI HNAYCSLIEKAEHFIYIEGGLDDAGAASVRAIMHWQHRTICKGQHSVLHNLYELLGPRVQDYISFYGLRSHGQVSGGGPMATSQVYVHSKIMIIDDQTTL IGSANINDRSLLGSRDSEIAVLIEDKELVDSSMGGKPWKAGKFSLSLRVALWSEHLGLRPGGEMNTTIYQEVFSCIPNDLIHSRAALRQSLASWKEKLGH TTIDLGIAPETVELYLKGDIKGSSPSERLEAVKGHLVSFPLDFMCKEDLRPMFSESEYYASHVFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10037708 [exp]	0	1
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10016830 [exp]	3.5	0.8794
AT5G11700			unknown protein		Lus10007461 [exp]	3.7	0.9081
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	5.0	0.9090
AT5G07740			actin binding (.1)		Lus10003482 [exp]	7.7	0.8898
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10016051 [exp]	13.0	0.8630
					Lus10034709 [exp]	14.1	0.8507
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10038405 [exp]	18.2	0.8920
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10012083 [exp]	18.4	0.8496
AT2G27900			unknown protein		Lus10000865 [exp]	19.2	0.8523
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	20.5	0.8905

Compare expression of checked genes

Lus10037708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.