Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05640 444 / 4e-156 Protein phosphatase 2C family protein (.1.2) AT5G27930 439 / 7e-154 Protein phosphatase 2C family protein (.1.2) AT3G16800 405 / 7e-141 Protein phosphatase 2C family protein (.1.2.3) AT3G02750 302 / 1e-98 Protein phosphatase 2C family protein (.1.2.3) AT1G16220 299 / 1e-97 Protein phosphatase 2C family protein (.1) AT4G03415 294 / 8e-96 Protein phosphatase 2C family protein (.1.2) AT1G79630 294 / 3e-95 Protein phosphatase 2C family protein (.1.2.3) AT5G36250 288 / 6e-94 Protein phosphatase 2C family protein (.1) AT1G03590 288 / 1e-93 Protein phosphatase 2C family protein (.1) AT5G01700 263 / 1e-84 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016831 [exp] 749 / 0 AT3G05640 459 / 2e-162 Protein phosphatase 2C family protein (.1.2) Lus10029874 [exp] 424 / 4e-148 AT5G27930 514 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10031475 [exp] 402 / 3e-139 AT5G27930 456 / 3e-161 Protein phosphatase 2C family protein (.1.2) Lus10015206 [exp] 393 / 6e-136 AT5G27930 451 / 4e-159 Protein phosphatase 2C family protein (.1.2) Lus10022588 [exp] 307 / 9e-102 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10041277 [exp] 322 / 5e-100 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10021486 [exp] 303 / 1e-99 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10037431 [exp] 321 / 4e-99 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3) Lus10039802 [exp] 299 / 1e-97 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G006200 [exp] 502 / 6e-179 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2) Potri.010G006100 [exp] 484 / 1e-171 AT3G05640 451 / 2e-159 Protein phosphatase 2C family protein (.1.2) Potri.013G012200 [exp] 456 / 9e-161 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G021900 [exp] 454 / 6e-160 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 325 / 2e-107 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 312 / 1e-102 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.019G103100 [exp] 308 / 2e-101 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 306 / 1e-100 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 300 / 4e-98 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 296 / 9e-97 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10037709 pacid=23167302 polypeptide=Lus10037709 locus=Lus10037709.g ID=Lus10037709.BGIv1.0 annot-version=v1.0 ATGGTTCTGTTCCCATCTTTCTTCAATGGGTTGGCGAGAACCGTGTCGATGAAGAAAGGGAAACCGTCGGAAGAGAAAGATTGCGGGAAGGAAGCTGCAG AAGAGTTGGCCAAAGATGCTAAAAGGAACGAGCTGATTCTGAGTTCTTCAGGAACTGTAAGTAAGTCCAACAAGTTCGCCTCTGTTTGCTCCAGGCGAGG TCAGAAGGGAGTCAACCAGGACTGCCTCGTCGTCTGGGAGGAATTTGGGTGCCAAGAGGACATGATGCTGTGCGGGGTATTCGACGGGCATGGACCATGG GGACATATGGTTTCGAAACGGGTTAGAGAAACAGTGCCGCAAGTTTTGCTCTGCAATTGGCAGGAGACTCTCAAGGCGTCCATTGACACGGAGATGGAAC TTGGGTTGAACGATCACCACCCTCATGATCATCGTCACAGGTTTGAAATCTGGAAGGAGTCTTATTTGAAGACCTACGCCGCTGTCGATCAGCAGCTCAA ACACCATCCCAAGATCGACACTTTCTCCAGTGGATCCACTGCTCTCACCATTGTAAAACAGGGGGAGCATCTAATGATAGCAAATGTAGGAGATTCACGA GCAGTTCTGGGGACAACTTCCGAAAACGGCACAGTTTCAGCTGTACAGCTCACCGTCGATTGCAAACCCAATTTACCACAGGAAGCGGAAAGAATCAAGA ACTCGAAGGGAAGAATATTCTGCCTGCCGGACGAGCCAGGAGTGTACAGAATATGGAGGCCGAGCGGCAAGACTCCGGGGCTGGCGTTGTCCAGAGCGTT CGGCGACTACTGTATCAAGGAATTCGGCCTCATCTCGACGCCGGAAGTGACCCAGCTGAGAATCACCGACAGCGACCAGTTTGTGATCCTGGCGACGGAT GGTGTGTGGGATGTGGTCTCGAATCAGGAAGCGGTGAGGGTTGTTTCGTCGGCGGCGGCGACCAATAGGGAGAAGTGTGCCAAGAGGCTTGTGGAGTTTG CTGCCAGAGCTTGGAAGCGTAAGAGGAACGGGATCGCCATGGATGACATGTCCGCCATTTGCTTGTTCTTCCATCGGATTGATGGTGATGCTGCTGCTGA GACTTCGGTGATTGTTTCGGCATCGGGTGATCGAGATGATGACGATGATGCGGTGAAGAAAAATGGTTTGGCTTAA
AA sequence Show only first row Show all	>Lus10037709 pacid=23167302 polypeptide=Lus10037709 locus=Lus10037709.g ID=Lus10037709.BGIv1.0 annot-version=v1.0 MVLFPSFFNGLARTVSMKKGKPSEEKDCGKEAAEELAKDAKRNELILSSSGTVSKSNKFASVCSRRGQKGVNQDCLVVWEEFGCQEDMMLCGVFDGHGPW GHMVSKRVRETVPQVLLCNWQETLKASIDTEMELGLNDHHPHDHRHRFEIWKESYLKTYAAVDQQLKHHPKIDTFSSGSTALTIVKQGEHLMIANVGDSR AVLGTTSENGTVSAVQLTVDCKPNLPQEAERIKNSKGRIFCLPDEPGVYRIWRPSGKTPGLALSRAFGDYCIKEFGLISTPEVTQLRITDSDQFVILATD GVWDVVSNQEAVRVVSSAAATNREKCAKRLVEFAARAWKRKRNGIAMDDMSAICLFFHRIDGDAAAETSVIVSASGDRDDDDDAVKKNGLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05640			Protein phosphatase 2C family ...		Lus10037709 [exp]	0	1
AT5G03890			unknown protein		Lus10015117 [exp]	2.4	0.9478
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10012059 [exp]	3.7	0.9360
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10011569 [exp]	4.2	0.9413
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10028273 [exp]	6.5	0.9386
AT2G16750			Protein kinase protein with ad...		Lus10014122 [exp]	7.1	0.9407
AT5G65660			hydroxyproline-rich glycoprote...		Lus10028221 [exp]	7.7	0.9063
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10004876 [exp]	10.6	0.9298
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	11.2	0.9448
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10016749 [exp]	11.3	0.8855
AT1G71710			DNAse I-like superfamily prote...		Lus10028697 [exp]	13.6	0.8710

Compare expression of checked genes

Lus10037709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.