Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16070 689 / 0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT3G14075 543 / 0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT2G42450 97 / 5e-21 alpha/beta-Hydrolases superfamily protein (.1) AT5G37710 66 / 2e-11 alpha/beta-Hydrolases superfamily protein (.1) AT4G00500 65 / 6e-11 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G49050 64 / 2e-10 alpha/beta-Hydrolases superfamily protein (.1) AT1G05790 59 / 5e-09 lipase class 3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016834 [exp] 1018 / 0 AT4G16070 750 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10015680 [exp] 558 / 0 AT3G14075 744 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10013158 [exp] 516 / 3e-176 AT3G14075 754 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10008121 [exp] 514 / 2e-175 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10024878 [exp] 105 / 1e-23 AT2G42450 618 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000708 [exp] 102 / 4e-22 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037690 [exp] 69 / 4e-14 AT3G14075 137 / 4e-39 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10037847 [exp] 69 / 5e-12 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10030391 [exp] 69 / 5e-12 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211200 [exp] 772 / 0 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.010G005800 [exp] 761 / 0 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.003G067900 [exp] 560 / 0 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.005G222000 [exp] 105 / 8e-24 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G159200 [exp] 69 / 6e-12 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.015G145900 [exp] 69 / 6e-12 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G142700 [exp] 68 / 9e-12 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G083600 [exp] 63 / 2e-10 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G130000 [exp] 62 / 5e-10 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G086900 [exp] 61 / 1e-09 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03893 [flax] [poplar] Lipase3_N Lipase 3 N-terminal region CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10037710 pacid=23167067 polypeptide=Lus10037710 locus=Lus10037710.g ID=Lus10037710.BGIv1.0 annot-version=v1.0 ATGGCGGCGGGGGCAATGGCGACCGCCGCCGGGGCAGCGGTAGTCCTCTACGTTTTAAGCCGGAGACTTGCTTCTGCTGGCGGGGAAGAAGGGGATGCCG CTGATCTGAGTTTGTCGAAATCGAGATCCGGATTGCGGCGGAGGATTTCCCGGCGCCCGGCTCAAGCTCCGGCTACCTGGCTGGAGACCTTGACTACCTT GACCGAGACACTTCGGTTTACATACTCCGAGACTCTCGGGAAATGGCCGATCGCAGATTTGGCTTTCGGAATCAATTACCTCATCCGTAGGCAGGGTGAT TTACAAGTATCCAGTATATATGCGGGCAGTGATTGTGTTCAGCTGAAAGGTCCTGAGATTGTGGCCGAGTTGAAGTACTTGCTCAGACTTCTGACCAATT GCATGTTCTTCTCCAAACGGCCATTCCCAATTTTCTTAGAGTGTGCTGGTTACTCTCAACATCATGTCCTTTTACAGGAGCCTAAGGCAGGGATCCTGAA GCCTGCTTTTACGATTATTCGCGATGAGAGCACCAAGCATTTCCTTTTGTTGATTAGAGGCACTCATAGCATCAAGGATACGTTGACTGCGGCTACTGGT GCTGTGGTTCCTTTCCACCATTCTGTTTTAGACGATGGTGGGATTAGTCACTTGGTGTTGGGATATGCGCATTGTGGAATGGTTGCCGCAGCTCGTTGGA TTGCTAAGCTCAGCTCTCCTTTCTTGCTCAAGGCTCTTGACGAATATCCTGAGTACAGAATTAAGGTAGTAGGCCATTCCCTTGGCGGTGGTACTGCAGC ATTATTAACATATATACTGCGAGAACAGAAGAGTTTTTCCTCTAGTACATGTGTGACATTCGCTCCAGCTGCGTGTATGACTTGGGATTTAGCAGAATCA GGCAAGAACTTCATCACTACAGTAATTAATGGATCCGATCTAGTCCCCACGTTTTCAACTGCTTCTATCGATGACCTCCGCTCTGAGGCGACTTCATCTT GGTTGAGTGATTTGAGAGACCAGGTTGAGCACACCAGGGTTCTAAACGTTGTTTATCGCTCTGCATCAGCCCTCGGATCTCGTCTACCCTCCATAGCCAG TGCAAAAGCTAGGGTTGCTGGTGCAGGTGCACTATTGCGCCCTGTTTCCAGCAGCACACAAGTCGTGATGAGACGAGCTCAGAATGTTGCGCAGGCTGTT GTTCGGACTCGGACATCTCTATCATCGTGGTCGTGCATTGGACCGCGTCGTAGGTCTGTTGGGCCATCATTAGCCCCTAAAGAAGACGATTTGCTCGAAA CTTCAGTAGTCTGTGAAAACTCCGAGACCATTGTTACTGAAATCCACACCGAAGACTTGTCGCACGATCAGTCAGGCAGCGATTCAAGCAGTGAAGAAGA CGAGCCGCTGATCTCGAGGGAGAAAGTCCATGATTCACCGGCGATGGAAGACTCGACAGAAGGCGAGTTGTGGCACGAGCTGGCAAAGGAGCTCGAGAGA CACGAGAACGAAGTTGATATCCATGTCCAAGCGGAAGAAGCAGCAGCAGCAAAAGAGATCCAGGAAGAGGAGAGGATCCTCGTCGAAGCTGCAACGGATG CTGCGAGTCCTATCTCGGCCGAGGATGTAGTCGAGAGCCACAAGTTCTACCCTCCTGGCAAGATCATGCACATTGTATGTATACCTTCCTCCCAAGCTGC TACTGCTACTCCGGAGGTGGCTGAGGAGACTACCGAAGAAGAAAATATTGGCATATATGAAACCCCGAGGGAGCTGTACAGTAAGATCCGGCTGTCGAAA ACGATGATAAACGATCATTACATGCCTATGTATAAGAAGATGATGGAATTGTTGATCAGGAAACTGGAGGAAGATGGTGAAGATTGTAGTAGGTGTATGA TATTAGAAGAAGAAGCTTTGTAG
AA sequence Show only first row Show all	>Lus10037710 pacid=23167067 polypeptide=Lus10037710 locus=Lus10037710.g ID=Lus10037710.BGIv1.0 annot-version=v1.0 MAAGAMATAAGAAVVLYVLSRRLASAGGEEGDAADLSLSKSRSGLRRRISRRPAQAPATWLETLTTLTETLRFTYSETLGKWPIADLAFGINYLIRRQGD LQVSSIYAGSDCVQLKGPEIVAELKYLLRLLTNCMFFSKRPFPIFLECAGYSQHHVLLQEPKAGILKPAFTIIRDESTKHFLLLIRGTHSIKDTLTAATG AVVPFHHSVLDDGGISHLVLGYAHCGMVAAARWIAKLSSPFLLKALDEYPEYRIKVVGHSLGGGTAALLTYILREQKSFSSSTCVTFAPAACMTWDLAES GKNFITTVINGSDLVPTFSTASIDDLRSEATSSWLSDLRDQVEHTRVLNVVYRSASALGSRLPSIASAKARVAGAGALLRPVSSSTQVVMRRAQNVAQAV VRTRTSLSSWSCIGPRRRSVGPSLAPKEDDLLETSVVCENSETIVTEIHTEDLSHDQSGSDSSSEEDEPLISREKVHDSPAMEDSTEGELWHELAKELER HENEVDIHVQAEEAAAAKEIQEEERILVEAATDAASPISAEDVVESHKFYPPGKIMHIVCIPSSQAATATPEVAEETTEEENIGIYETPRELYSKIRLSK TMINDHYMPMYKKMMELLIRKLEEDGEDCSRCMILEEEAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16070			Mono-/di-acylglycerol lipase, ...		Lus10037710 [exp]	0	1
AT4G32350			Regulator of Vps4 activity in ...		Lus10034905 [exp]	2.0	0.8666
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	9.9	0.8852
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	13.4	0.8502
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010173 [exp]	14.0	0.8515
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10040359 [exp]	15.8	0.8170
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001428 [exp]	16.4	0.8545
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	22.0	0.8221
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	22.9	0.8658
AT4G24100			Protein kinase superfamily pro...		Lus10033230 [exp]	23.2	0.8279
AT5G14720			Protein kinase superfamily pro...		Lus10032144 [exp]	26.1	0.8265

Compare expression of checked genes

Lus10037710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.